PXD010000

Dependencies:

wget, numpy, pandas, pyteomics, tensorflow>2.0

step 1: download

Download mzid and mzml files with wget from PRIDE:

python download_from_pride.py

step 2: assign search results

Dumps all (peptide-spectrum)-pairs in a hdf-file:

python merge_mzid_mzml.py 

step 3: Fire up a tensorflow.dataset

Performs loading,preprocessing,shuffle and batch-creation in a tensorflow.dataset

python hdf_ds.py