Gen3 Monthly Release 2025.09 1756825883

chordsprod/staging.chordshealth.org/values/etl.yaml

@@ -7,13 +7,10 @@ etl:
   tube:
     image:
       repository: 707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/tube
-      #tag: 2025.08
-      # patch to flatten nested array
-      tag: "2025.08"
+      tag: '2025.08'
   esEndpoint: elasticsearch
   esGarbageCollect:
     enabled: true
-
   etlMapping:
     mappings:
       - name: chordstaging_geospatial_data_resource
@@ -30,16 +27,17 @@ etl:
           - name: measures_subcategory_minor
           - name: measures
           - name: time_extent_start_year
-            src:  time_extent_start_yyyy
+            src: time_extent_start_yyyy
           - name: time_extent_end_year
-            src:  time_extent_end_yyyy
+            src: time_extent_end_yyyy
           - name: temporal_resolution
           - name: spatial_resolution
           - name: spatial_coverage
           - name: spatial_bounding_box
           - name: exposure_media
         parent_props:
-          - path: resources[resource_short_name:short_name, resource_url, resource_description:description, domain, keywords, access_type].projects[project_sponsor, project_sponsor_type]
+          - path: resources[resource_short_name:short_name, resource_url, resource_description:description,
+              domain, keywords, access_type].projects[project_sponsor, project_sponsor_type]
       - name: chordstaging_population_data_resource
         doc_type: population_data_resource
         type: aggregator
@@ -54,9 +52,9 @@ etl:
           - name: measures_subcategory_minor
           - name: measures
           - name: time_extent_start_year
-            src:  time_extent_start_yyyy
+            src: time_extent_start_yyyy
           - name: time_extent_end_year
-            src:  time_extent_end_yyyy
+            src: time_extent_end_yyyy
           - name: temporal_resolution
           - name: spatial_resolution
           - name: spatial_coverage
@@ -66,7 +64,8 @@ etl:
           - name: model_methods
           - name: population_studied
         parent_props:
-          - path: resources[resource_short_name:short_name, resource_url, resource_description:description, domain, keywords, access_type].projects[project_sponsor, project_sponsor_type]
+          - path: resources[resource_short_name:short_name, resource_url, resource_description:description,
+              domain, keywords, access_type].projects[project_sponsor, project_sponsor_type]
       - name: chordstaging_key_dataset_resource
         doc_type: key_data_resource
         type: aggregator
@@ -80,9 +79,9 @@ etl:
           - name: measures_subcategory_minor
           - name: measures
           - name: time_extent_start_year
-            src:  time_extent_start_yyyy
+            src: time_extent_start_yyyy
           - name: time_extent_end_year
-            src:  time_extent_end_yyyy
+            src: time_extent_end_yyyy
           - name: time_available_comment
           - name: temporal_resolution
           - name: spatial_resolution
@@ -92,4 +91,10 @@ etl:
           - name: data_formats
           - name: data_location_text
         parent_props:
-          - path: resources[resource_short_name:short_name, resource_url, resource_description:description, domain, keywords, access_type].projects[project_sponsor, project_sponsor_type]
+          - path: resources[resource_short_name:short_name, resource_url, resource_description:description,
+              domain, keywords, access_type].projects[project_sponsor, project_sponsor_type]
+  image:
+    tube:
+      tag: '2025.09'
+    spark:
+      tag: '2025.09'

chordsprod/staging.chordshealth.org/values/fence.yaml

@@ -3,13 +3,10 @@ fence:
   replicaCount: 2
   image:
     repository: 707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/fence
-    tag: 2025.08
-
+    tag: '2025.09'
   usersync:
-     #-- (bool) Whether to run Fence usersync or not.
     usersync: true
     userYamlS3Path: s3://cdis-gen3-users/staging-chords-health/user.yaml
-
   USER_YAML: |
     authz:
       # policies automatically given to anyone, even if they are not authenticated
@@ -604,21 +601,11 @@ fence:
           - mds_admin
           - data_upload
           - services.sheepdog-admin
-
-
-  # -- (map) External Secrets settings.
   externalSecrets:
-    # -- (string) Will create the Helm "fence-jwt-keys" secret even if Secrets Manager is enabled. This is helpful if you are wanting to use External Secrets for some, but not all secrets.
     createK8sJwtKeysSecret: false
-    # -- (string) Will create the Helm "fence-google-app-creds-secret" and "fence-google-storage-creds-secret" secrets even if Secrets Manager is enabled. This is helpful if you are wanting to use External Secrets for some, but not all secrets.
     createK8sGoogleAppSecrets: true
-    # -- (string) Will override the name of the aws secrets manager secret. Default is "fence-jwt-keys"
-    fenceJwtKeys: "chordstaging-fence-jwt"
-    # -- (string) Will override the name of the aws secrets manager secret. Default is "fence-google-app-creds-secret"
-    fenceGoogleAppCredsSecret:
-    # -- (string) Will override the name of the aws secrets manager secret. Default is "fence-google-storage-creds-secret"
-    fenceGoogleStorageCredsSecret:
-    # -- (string) Will override the name of the aws secrets manager secret. Default is "fence-config"
-    fenceConfig: "chordstaging-fence-config"
-    # -- (string) Will override the name of the aws secrets manager secret. Default is "Values.global.environment-.Chart.Name-creds"
-    dbcreds: "chords_staging-fence-db-creds"
+    fenceJwtKeys: chordstaging-fence-jwt
+    fenceGoogleAppCredsSecret: null
+    fenceGoogleStorageCredsSecret: null
+    fenceConfig: chordstaging-fence-config
+    dbcreds: chords_staging-fence-db-creds

chordsprod/staging.chordshealth.org/values/guppy.yaml

@@ -3,9 +3,8 @@ guppy:
   dbRestore: false
   image:
     repository: 707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/guppy
-    tag: 2025.08
+    tag: '2025.09'
   esEndpoint: elasticsearch:9200
-
   indices:
     - index: chordstaging_geospatial_data_resource
       type: geospatial_data_resource