Merge pull request #13 from uclahs-cds/tyamaguchi-update-picard-2.26.8

Update Picard to 2.26.8 to address Log4j critical vulnerability

CHANGELOG.md

@@ -9,6 +9,10 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm
 
 ## ## [Unreleased]
 
+## [2.26.8] - 2021-12-16
+### Added
+- Update Picard to 2.26.8 to address Log4j critical vulnerability [GHSA-jfh8-c2jp-5v3q](https://github.com/advisories/GHSA-jfh8-c2jp-5v3q).
+
 ## [2.26.3] - 2021-10-19
 ### Added
 - Update Picard from 2.25.5 to 2.26.3

Dockerfile

@@ -1,7 +1,7 @@
 FROM blcdsdockerregistry/bl-base:1.1.0 AS builder
 
 # Use mamba to install tools and dependencies into /usr/local
-ARG PICARD_VERSION=2.26.3
+ARG PICARD_VERSION=2.26.8
 RUN mamba create -qy -p /usr/local \
     -c bioconda \
     picard-slim==${PICARD_VERSION}

README.md

@@ -8,7 +8,7 @@ Picard can be found on GitHub at [broadinstitute/picard](https://github.com/broa
 # Version
 | Tool | Version |
 |------|---------|
-| picard-slim | 2.26.3 |
+| picard-slim | 2.26.8 |
 | Java | 1.8 |
 
 

metadata.yaml

@@ -2,9 +2,9 @@
 Category: 'docker'
 Description: 'Docker repository for Picard'
 Maintainers: ['[email protected]']
-Contributors: ['Aaron Holmes', 'Helena Winata', 'Jieun Oh']
+Contributors: ['Aaron Holmes', 'Helena Winata', 'Jieun Oh', 'Takafumi Yamaguchi']
 Languages: ['Dockerfile']
 Tools: ['Picard']
-Version: ['2.26.3']
+Version: ['2.26.8']
 Purpose: 'A set of tools for manipulating SAM/BAM/CRAM and VCF file formats'
 References: 'https://github.com/broadinstitute/picard'