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Merge pull request #13 from uclahs-cds/tyamaguchi-update-picard-2.26.8
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Update Picard to 2.26.8 to address Log4j critical vulnerability
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tyamaguchi-ucla authored Dec 16, 2021
2 parents 1521631 + 296f5e6 commit 2552709
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4 changes: 4 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -9,6 +9,10 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm

## ## [Unreleased]

## [2.26.8] - 2021-12-16
### Added
- Update Picard to 2.26.8 to address Log4j critical vulnerability [GHSA-jfh8-c2jp-5v3q](https://github.com/advisories/GHSA-jfh8-c2jp-5v3q).

## [2.26.3] - 2021-10-19
### Added
- Update Picard from 2.25.5 to 2.26.3
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2 changes: 1 addition & 1 deletion Dockerfile
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FROM blcdsdockerregistry/bl-base:1.1.0 AS builder

# Use mamba to install tools and dependencies into /usr/local
ARG PICARD_VERSION=2.26.3
ARG PICARD_VERSION=2.26.8
RUN mamba create -qy -p /usr/local \
-c bioconda \
picard-slim==${PICARD_VERSION}
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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -8,7 +8,7 @@ Picard can be found on GitHub at [broadinstitute/picard](https://github.com/broa
# Version
| Tool | Version |
|------|---------|
| picard-slim | 2.26.3 |
| picard-slim | 2.26.8 |
| Java | 1.8 |


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4 changes: 2 additions & 2 deletions metadata.yaml
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Category: 'docker'
Description: 'Docker repository for Picard'
Maintainers: ['[email protected]']
Contributors: ['Aaron Holmes', 'Helena Winata', 'Jieun Oh']
Contributors: ['Aaron Holmes', 'Helena Winata', 'Jieun Oh', 'Takafumi Yamaguchi']
Languages: ['Dockerfile']
Tools: ['Picard']
Version: ['2.26.3']
Version: ['2.26.8']
Purpose: 'A set of tools for manipulating SAM/BAM/CRAM and VCF file formats'
References: 'https://github.com/broadinstitute/picard'

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