Strelka2 is a tool for fast and accurate calling of germline and somatic variants. To execute Strelka2, a matched normal sample, a normal.bam, and a reference fasta are needed to distinguish both germline variation and sequencing artifacts. The output of Strelka2 includes variant predictions, .vcf.gz files, and statistics, .tsv files. For more input requirements and output file formats, please visit Strelka2 user guide.
The Strelka2 image is located in the Boutros Lab Docker Hub repo: https://hub.docker.com/repository/docker/blcdsdockerregistry/strelka2
The main github page of Strelka2 can be found here. For execution and run options, please consult the Strelka2 user manual is here.
| Tool | Version |
|---|---|
| Strelka2 | 2.9.10 |
- Kim, S., Scheffler, K., Halpern, A.L. et al. Strelka2: fast and accurate calling of germline and somatic variants. Nat Methods 15, 591–594 (2018). https://doi.org/10.1038/s41592-018-0051-x
Author: Mao Tian, Caden Bugh.
docker-Strelka2 is licensed under the GNU General Public License version 2. See the file LICENSE for the terms of the GNU GPL license.
docker-Strelka2 is a tool for fast and accurate calling of germline and somatic variants
Copyright (C) 2021 University of California Los Angeles ("Boutros Lab") All rights reserved.
This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.