Move linting configuration to .cicd-env file

[nwiltsie]

Description

This is a super-simple change that moves the linting configuration from the GitHub workflow file to a new .cicd-env file. There are no "real" changes to this package.

I added a flag to skip the "no repositories named public- or private-" test. For backwards compatibility that test currently only produces a warning, but once we either rename or add specific ignore rules to each offending repo we can properly enable it.

This change enables the new bllint script from https://github.com/uclahs-cds/docker-CICD-base/pull/60 to lint a checked-out copy of this repository for easier development.

Checklist

• This PR does NOT contain Protected Health Information (PHI). A repo may need to be deleted if such data is uploaded.
  Disclosing PHI is a major problem¹ - Even a small leak can be costly².

• This PR does NOT contain germline genetic data³, RNA-Seq, DNA methylation, microbiome or other molecular data⁴.

• This PR does NOT contain other non-plain text files, such as: compressed files, images (e.g. .png, .jpeg), .pdf, .RData, .xlsx, .doc, .ppt, or other output files.

  To automatically exclude such files using a .gitignore file, see here for example.

• I have read the code review guidelines and the code review best practice on GitHub check-list.

• I have set up or verified the main branch protection rule following the github standards before opening this pull request.

• The name of the branch is meaningful and well formatted following the standards, using [AD_username (or 5 letters of AD if AD is too long)]-[brief_description_of_branch].

• I have added the major changes included in this pull request to the CHANGELOG.md under the next release version or unreleased, and updated the date.

Footnotes

1. UCLA Health reaches $7.5m settlement over 2015 breach of 4.5m patient records ↩

2. The average healthcare data breach costs $2.2 million, despite the majority of breaches releasing fewer than 500 records. ↩

3. Genetic information is considered PHI.
   Forensic assays can identify patients with as few as 21 SNPs ↩

4. RNA-Seq, DNA methylation, microbiome, or other molecular data can be used to predict genotypes (PHI) and reveal a patient's identity. ↩

[dan-knight]

If we add a file like this, we also need to include it in Rbuildignore so it isn't included in the built package.

For clarity, this change is mainly for compatibility with bllint, correct? If so, we should make this change to all R package repos for consistency. (Forgive me if you're already on top of it.)

[nwiltsie]

Good to know, I'll get it added to Rbuildignore tomorrow morning. And yes, I'm slowly doing this organization-wide.

[dan-knight]

LGTM!