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Release 0.9.0
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@zhuchcn zhuchcn released this 25 Jul 17:18
· 1117 commits to main since this release
v0.9.0
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Fixed

  • Fixed issue that peptides caused by start gain mutations are not called by bruteForce. #492

  • Fixed issue that variant peptides caused by start gain mutations from noncoding transcripts are not called in some cases. Stop gain mutations from downstream are also missed in some cases. #495

  • Fixed issue that some variant peptides were not called with in-frame deletions. #515

  • Fixed issue that the shuffled decoy sequences produced by decoyFasta are not reproducible when input FASTA order is changed. #517

  • Fixed issue that stop lost mutations are not recognized correctly. #519

  • Fixed issue that start gain and stop lost mutations before the novel start site were not excluded. #520

  • Fixed issue that frameshifting mutations on the same node of a novel ORF start site and is right after it was not carried over to downstream nodes. #526

  • Fixed issue that stop lost mutations were not recognized for deletions. #527

  • Fixed issue that in-frame deletion stop retaining mutations were not recognized #528

  • Fixed issue that variant coordinates not handled correctly when the cleavage site is contained in the inserted sequence. #52

  • Fixed issue that peptides are not called with overlapping deletions. #531

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