parameterize version numbers of docker images

uclahs-cds · Apr 15, 2024 · ab55b26 · ab55b26
1 parent 471f365
commit ab55b26
Showing 1 changed file with 7 additions and 3 deletions.
diff --git a/config/default.config b/config/default.config
@@ -22,10 +22,14 @@ params {
 
     docker_container_registry = "ghcr.io/uclahs-cds"
     pipeval_version = "4.0.0-rc.2"
+    bwa_and_samtools_version = "2.2.1_samtools-1.17"
+    hisat2_and_samtools_version = "2.2.1_samtools-1.17"
+    picardtools_version = "3.1.1"
 
-    docker_image_bwa_and_samtools = "${-> params.docker_container_registry}/bwa-mem2:2.2.1_samtools-1.17"
-    docker_image_hisat2_and_samtools = "${-> params.docker_container_registry}/hisat2:2.2.1_samtools-1.17"
-    docker_image_picardtools = "${-> params.docker_container_registry}/picard:3.1.1"
+
+    docker_image_bwa_and_samtools = "${-> params.docker_container_registry}/bwa-mem2:${params.bwa_and_samtools_version}"
+    docker_image_hisat2_and_samtools = "${-> params.docker_container_registry}/hisat2:${hisat2_and_samtools_version}"
+    docker_image_picardtools = "${-> params.docker_container_registry}/picard:${picardtools_version}"
     docker_image_validate = "${-> params.docker_container_registry}/pipeval:${params.pipeval_version}"
     docker_image_gatk = "broadinstitute/gatk:4.2.4.1"
     docker_image_samtools = "${-> params.docker_container_registry}/samtools:1.17"