Merge pull request #331 from uclahs-cds/jsalmingo-add-param-dump

Add method to dump params object
uclahs-cds · Aug 6, 2024 · ddd326a · ddd326a
2 parents a14b307 + 3057e57
commit ddd326a
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -16,6 +16,9 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm
 - Update Nextflow configuration test workflows
 - Update README.md to match template
 
+### Added
+- Add `params` object dump
+
 ## [10.0.0] - 2024-03-29
 ### Added
 - Add Action to generate documentation in GitHub Pages

diff --git a/config/methods.config b/config/methods.config
@@ -2,6 +2,7 @@ includeConfig "../external/nextflow-config/config/csv/csv_parser.config"
 includeConfig "../external/nextflow-config/config/methods/common_methods.config"
 includeConfig "../external/nextflow-config/config/retry/retry.config"
 includeConfig "../external/nextflow-config/config/schema/schema.config"
+includeConfig "../external/nextflow-config/config/store_object_as_json/store_object_as_json.config"
 
 methods {
     check_aligner = {
@@ -218,6 +219,7 @@ methods {
         methods.check_aligner()
         methods.set_resources_allocation()
 	methods.setup_docker_cpus()
+	json_extractor.store_object_as_json(params, new File("${params.log_output_dir}/nextflow-log/params.json"))
         retry.setup_retry()
         }
     }