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align-DNA v9.0.0
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@jarbet jarbet released this 31 Oct 18:42
· 131 commits to main since this release
v9.0.0
ebe5c97
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Learn about vigilant mode.

Changed

  • Change to github packages instead of dockerhub
  • Standardize intermediate and output filenames using generate_standardized_filename
  • Update input csv according to here (Section "Input structures for alignment pipelines")
  • run_MarkDuplicatesSpark_GATK now retries once with 130GB on F72, and 140GB on M64
  • Update registered output function

Added

  • Instructions in README for setting up github PAT
  • Parameter docker_container_registry in default.config
  • Release workflow

Full Changelog: v8.1.0...v9.0.0

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