align-DNA v9.0.0
Changed
- Change to github packages instead of dockerhub
- Standardize intermediate and output filenames using generate_standardized_filename
- Update input csv according to here (Section "Input structures for alignment pipelines")
run_MarkDuplicatesSpark_GATK
now retries once with 130GB on F72, and 140GB on M64- Update registered output function
Added
- Instructions in README for setting up github PAT
- Parameter
docker_container_registry
indefault.config
- Release workflow
Full Changelog: v8.1.0...v9.0.0