Discussions

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  Information on fields in the pipeline's MAF output

  sorelfitzgibbon asked Aug 11, 2023 in General · Unanswered

  

  

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  How to handle limiting call regions

  sorelfitzgibbon asked Jul 31, 2023 in General · Unanswered

  

  

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  sSNV QC

  graceooh asked Apr 24, 2023 in Q&A · Unanswered

  

  

  

  

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  sSNV QC Ideas

  maotian06 asked Apr 24, 2023 in Ideas · Closed · Unanswered

  

  

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  Atomize Mutect2 MNV variants?

  sorelfitzgibbon asked Apr 13, 2023 in Q&A · Answered

  

  

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  Suggested changes

  sorelfitzgibbon asked Feb 3, 2023 in Ideas · Unanswered

  

  

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  Call-sSNV Algorithms Comparison

  documentation Improvements or additions to documentation

  maotian06 asked Oct 1, 2022 in General · Unanswered

  

  

  

  

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  Contamination Estimation Option for Samples with cross-contamination

  maotian06 asked Nov 22, 2022 in Show and tell · Unanswered

  

  

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  Mutect2 Option: --germline-resource

  documentation Improvements or additions to documentation

  maotian06 asked Apr 30, 2022 in Show and tell · Unanswered

  

  

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  Mutect2 joint somatic SNV calling and SRC

  tyamaguchi-ucla asked Jul 19, 2022 in General · Unanswered

  

  

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  Tumor-only-model

  RoniHaas asked May 27, 2022 in Q&A · Unanswered

  

  

  

  

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  How to use YAML as input files

  maotian06 asked Apr 22, 2022 in Show and tell · Unanswered

  

  

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  Strelka2's --callRegions option

  enhancement New feature or request

  maotian06 asked Apr 15, 2022 in Q&A · Unanswered

  

  

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  Expected YAML input for multiple samples

  maotian06 asked Feb 28, 2022 in Ideas · Unanswered

  

  

  

  

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  Orientation Bias Filters

  enhancement New feature or request

  maotian06 asked Feb 28, 2022 in Ideas · Unanswered

  

  

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  Welcome to pipeline-call-sSNV Discussions!

  tyamaguchi-ucla asked Feb 19, 2022 in General · Unanswered

  

  

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