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create canonical chrs output VCF? #217

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sorelfitzgibbon opened this issue Aug 1, 2023 · 0 comments
Open

create canonical chrs output VCF? #217

sorelfitzgibbon opened this issue Aug 1, 2023 · 0 comments

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@sorelfitzgibbon
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We might also need to consider creating two final intersected VCFs with and without non-canonical chrs as many downstream tools don't take non-canonical chrs. (some may error out)

Originally posted by @tyamaguchi-ucla in #211 (comment)
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