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Adding a time limit for MuSE #220

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maotian06 opened this issue Aug 9, 2023 · 0 comments
Open

Adding a time limit for MuSE #220

maotian06 opened this issue Aug 9, 2023 · 0 comments

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@maotian06
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Hi @sorelfitzgibbon @yashpatel6 @tyamaguchi-ucla

For the MuSE issue that the call_sSNV_MuSE will run forever without finishing, we can probably set a time limit for that process. (If this was not resolved after the cluster upgrade.)

Here I attached all my call-sSNV call_sSNV_MuSE trace table, hope this could be helpful:
callsSNV.trace-muse.2023-08-08.txt

The average time to complete call_sSNV_MuSE for my WGS samples would be 2~4 hours but got one outliner with 13 hours of running time.

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