v1.0.0

What's Changed

• Add standard pipeline workflows by @nwiltsie in #37
• Standardize input structure and upgrade from release candidate by @sorelfitzgibbon in #40

Full Changelog: v1.0.0-rc.1...v1.0.0

v1.0.0-rc.1

What's Changed

• Enable dependabot to keep submodules up-to-date by @nwiltsie in #8
• Sfitz initial setup and new method for passing sample information by @sorelfitzgibbon in #4
• Sfitz add nftest by @sorelfitzgibbon in #11
• Bump external/pipeline-Nextflow-module from badabb2 to 9db08f0 by @dependabot in #17
• Bump external/pipeline-Nextflow-config from c211cc3 to 7e10f2c by @dependabot in #14
• remove stats threads by @sorelfitzgibbon in #18
• Sfitz use sanitize from common by @sorelfitzgibbon in #12
• Add picard alignment qc and adjust Fx.configs by @sorelfitzgibbon in #19
• Add qualimap bamqc and fast algorithm option for picard by @sorelfitzgibbon in #20
• Add readlength input and allow multiple BAMs by @sorelfitzgibbon in #25
• Sfitz add schema by @sorelfitzgibbon in #29
• Add README by @sorelfitzgibbon in #33
• Add flow chart by @sorelfitzgibbon in #34
• Add cwm defaults by @sorelfitzgibbon in #35
• Bump external/pipeline-Nextflow-config from da8e990 to 3ec7186 by @dependabot in #22
• Rename pipeline and first release by @sorelfitzgibbon in #36

New Contributors

• @nwiltsie made their first contribution in #8
• @sorelfitzgibbon made their first contribution in #4
• @dependabot made their first contribution in #17

Full Changelog: https://github.com/uclahs-cds/pipeline-generate-SQC-BAM/commits/v1.0.0-rc.1