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yashpatel6 committed May 29, 2024
1 parent 05b2763 commit 1001624
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion module/indel-realignment.nf
Original file line number Diff line number Diff line change
Expand Up @@ -175,7 +175,7 @@ workflow realign_indels {
"${params.bundle_mills_and_1000g_gold_standard_indels_vcf_gz}.tbi",
params.bundle_known_indels_vcf_gz,
"${params.bundle_known_indels_vcf_gz}.tbi",
"${params.getOrDefault('intervals', null) ?: params.work_dir + 'NO_FILE.bed'}",
"${params.getOrDefault('intervals', null) ?: params.work_dir + '/NO_FILE.bed'}",
input_ch_rtc
)

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