uf-hobi-informatics-lab
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Repositories
- GatorOnco Public
- ovid Public
Ovid is a PySpark ETL pipeline that transforms and harmonizes healthcare data into standardized Common Data Models (PCORnet and OMOP). It automates ingesting raw partner data, applying formatting rules, deduplication, mapping to standard vocabularies, running data quality checks, and uploading to a centralized data warehouse.
- RuleBaseSmokingInfoExtractionPy Public
Python implementation of RuleBaseSmokingInfoExtraction java package
- GatorTron-Prediction Public
This is the official implementation of "Narrative Feature or Structured Feature? A Study of Large Language Models to Identify Cancer Patients at Risk of Heart Failure"
- HIV-Stigma-Topic-Modeling Public
To characterize stigma dimensions, social, and related behavioral circumstances in people living with HIV (PLWHs) seeking care, using natural language processing methods applied to a large collection of electronic health record (EHR) clinical notes
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