The two "gene_stat"scripts were used to calculate gene statistics for Paedocypris and other cyprinid genomes.
Run as: ruby SCRIPT.rb FILE
The "find_variable_sites.rb" script was used to detect the number of nucleotide substitutions between the two Paedocypris geneomes based on a whole genome alignemnent.
Run as: ruby find_variable_sites.rb FILE.fas