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Gracefully handle missing files #31

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merged 5 commits into from
Jul 12, 2024
Merged

Gracefully handle missing files #31

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f64dabe
Gracefully handle missing files
bpurinton Jul 12, 2024
42aa8c6
handle missing ba files
bpurinton Jul 12, 2024
5d72d99
handle missing log files
bpurinton Jul 12, 2024
1cb5eb5
handle missing L/R sub files
bpurinton Jul 12, 2024
8e15d7e
handle missing xml camera files
bpurinton Jul 12, 2024
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46 changes: 19 additions & 27 deletions asp_plot/bundle_adjust.py
View file
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Original file line number Diff line number Diff line change
@@ -1,17 +1,22 @@
import os
import glob
import logging
import pandas as pd
import geopandas as gpd
import matplotlib.pyplot as plt
from matplotlib.lines import Line2D
import contextily as ctx
from asp_plot.utils import ColorBar, Plotter, save_figure
from asp_plot.utils import ColorBar, Plotter, save_figure, glob_file


logging.basicConfig(level=logging.WARNING)
logger = logging.getLogger(__name__)


class ReadBundleAdjustFiles:
def __init__(self, directory, bundle_adjust_directory):
self.directory = directory
self.bundle_adjust_directory = bundle_adjust_directory
self.full_directory = os.path.join(directory, bundle_adjust_directory)

def get_csv_paths(self, geodiff_files=False):
filenames = [
Expand All @@ -22,14 +27,13 @@ def get_csv_paths(self, geodiff_files=False):
if geodiff_files:
filenames = [f.replace(".csv", "-diff.csv") for f in filenames]

paths = [
glob.glob(os.path.join(self.directory, self.bundle_adjust_directory, f))[0]
for f in filenames
]
paths = [glob_file(self.full_directory, f) for f in filenames]

for path in paths:
if not os.path.isfile(path):
raise ValueError(f"CSV file not found: {path}")
if path is None:
raise ValueError(
"\n\nInitial and final bundle adjust CSV file not found. Did you run bundle_adjust?\n\n"
)

initial, final = paths
return initial, final
Expand Down Expand Up @@ -101,15 +105,9 @@ def get_initial_final_geodiff_gdfs(self):
return geodiff_initial_gdf, geodiff_final_gdf

def get_mapproj_residuals_gdf(self):
path = glob.glob(
os.path.join(
self.directory,
self.bundle_adjust_directory,
"*-mapproj_match_offsets.txt",
)
)[0]
if not os.path.isfile(path):
raise ValueError(f"MapProj Residuals TXT file not found: {path}")
path = glob_file(self.full_directory, "*-mapproj_match_offsets.txt")
if path is None:
raise ValueError("\n\nMapProj Residuals TXT file not found.\n\n")

cols = ["lon", "lat", "height_above_datum", "mapproj_ip_dist_meters"]
resid_mapprojected_df = pd.read_csv(path, skiprows=2, names=cols)
Expand All @@ -124,15 +122,9 @@ def get_mapproj_residuals_gdf(self):
return resid_mapprojected_gdf

def get_propagated_triangulation_uncert_df(self):
path = glob.glob(
os.path.join(
self.directory,
self.bundle_adjust_directory,
"*-triangulation_uncertainty.txt",
)
)[0]
if not os.path.isfile(path):
raise ValueError(f"Triangulation Uncertainty TXT file not found: {path}")
path = glob_file(self.full_directory, "*-triangulation_uncertainty.txt")
if path is None:
raise ValueError("\n\nTriangulation Uncertainty TXT file not found.\n\n")

cols = [
"left_image",
Expand All @@ -155,7 +147,7 @@ class PlotBundleAdjustFiles(Plotter):
def __init__(self, geodataframes, **kwargs):
super().__init__(**kwargs)
if not isinstance(geodataframes, list):
raise ValueError("Input must be a list of GeoDataFrames")
raise ValueError("\n\nInput must be a list of GeoDataFrames\n\n")
self.geodataframes = geodataframes

def gdf_percentile_stats(self, gdf, column_name="mean_residual"):
Expand Down
24 changes: 10 additions & 14 deletions asp_plot/processing_parameters.py
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,31 +1,27 @@
import os
import glob
import logging
import matplotlib.pyplot as plt
from asp_plot.utils import save_figure
from asp_plot.utils import save_figure, glob_file

logging.basicConfig(level=logging.WARNING)
logger = logging.getLogger(__name__)

class ProcessingParameters:
def __init__(self, directory, bundle_adjust_directory, stereo_directory):
self.directory = directory
self.bundle_adjust_directory = bundle_adjust_directory
self.stereo_directory = stereo_directory
self.full_ba_directory = os.path.join(directory, bundle_adjust_directory)
self.full_stereo_directory = os.path.join(directory, stereo_directory)
self.processing_parameters_dict = {}

try:
self.bundle_adjust_log = glob.glob(
os.path.join(self.directory, self.bundle_adjust_directory, "*log*.txt")
)[0]
self.stereo_log = glob.glob(
os.path.join(self.directory, self.stereo_directory, "*log-stereo*.txt")
)[0]
self.point2dem_log = glob.glob(
os.path.join(
self.directory, self.stereo_directory, "*log-point2dem*.txt"
)
)[0]
self.bundle_adjust_log = glob_file(self.full_ba_directory, "*log-bundle_adjust*.txt")
self.stereo_log = glob_file(self.full_stereo_directory, "*log-stereo*.txt")
self.point2dem_log = glob_file(self.full_stereo_directory, "*log-point2dem*.txt")
except:
raise ValueError(
"Could not find log files in bundle adjust and stereo directories\nCheck that these *log*.txt files exist in the directories specified"
"\n\nCould not find log files in bundle adjust and stereo directories\nCheck that these *log*.txt files exist in the directories specified.\n\n"
)

def from_log_files(self):
Expand Down
64 changes: 40 additions & 24 deletions asp_plot/scenes.py
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,13 +1,17 @@
import os
import glob
import logging
import numpy as np
import matplotlib.pyplot as plt
import matplotlib.gridspec as gridspec
from shapely import wkt
from asp_plot.utils import Raster, Plotter, save_figure
from asp_plot.utils import Raster, Plotter, save_figure, glob_file
from asp_plot.stereopair_metadata_parser import StereopairMetadataParser


logging.basicConfig(level=logging.WARNING)
logger = logging.getLogger(__name__)


class SceneGeometryPlotter(StereopairMetadataParser):
def __init__(self, directory, **kwargs):
super().__init__(directory=directory, **kwargs)
Expand Down Expand Up @@ -138,7 +142,7 @@ def dg_geom_plot(self, save_dir=None, fig_fn=None):

# TODO: Should store xml names in the pairdict
# Use r100 outputs from dg_mosaic
xml_list = sorted(glob.glob(os.path.join(self.directory, "*r100.[Xx][Mm][Ll]")))
xml_list = sorted(glob_file(self.directory, "*r100.[Xx][Mm][Ll]", all_files=True))

eph1_gdf, eph2_gdf = [self.getEphem_gdf(xml) for xml in xml_list]
fp1_gdf, fp2_gdf = [self.xml2gdf(xml) for xml in xml_list]
Expand Down Expand Up @@ -179,18 +183,10 @@ def __init__(self, directory, stereo_directory, **kwargs):
super().__init__(**kwargs)
self.directory = directory
self.stereo_directory = stereo_directory
self.full_stereo_directory = os.path.join(directory, stereo_directory)

try:
self.left_ortho_sub_fn = glob.glob(
os.path.join(self.directory, self.stereo_directory, "*-L_sub.tif")
)[0]
self.right_ortho_sub_fn = glob.glob(
os.path.join(self.directory, self.stereo_directory, "*-R_sub.tif")
)[0]
except:
raise ValueError(
"Could not find L-sub and R-sub images in stereo directory"
)
self.left_ortho_sub_fn = glob_file(self.full_stereo_directory, "*-L_sub.tif")
self.right_ortho_sub_fn = glob_file(self.full_stereo_directory, "*-R_sub.tif")

def plot_orthos(self, save_dir=None, fig_fn=None):
p = StereopairMetadataParser(self.directory).get_pair_dict()
Expand All @@ -199,17 +195,37 @@ def plot_orthos(self, save_dir=None, fig_fn=None):
fig.suptitle(self.title, size=10)
axa = axa.ravel()

ortho_ma = Raster(self.left_ortho_sub_fn).read_array()
self.plot_array(ax=axa[0], array=ortho_ma, cmap="gray", add_cbar=False)
axa[0].set_title(
f"Left image\n{p['id1_dict']['id']}, {p['id1_dict']['meanproductgsd']:0.2f} m"
)
if self.left_ortho_sub_fn:
ortho_ma = Raster(self.left_ortho_sub_fn).read_array()
self.plot_array(ax=axa[0], array=ortho_ma, cmap="gray", add_cbar=False)
axa[0].set_title(
f"Left image\n{p['id1_dict']['id']}, {p['id1_dict']['meanproductgsd']:0.2f} m"
)
else:
axa[0].text(
0.5,
0.5,
"One or more required\nfiles are missing",
horizontalalignment="center",
verticalalignment="center",
transform=axa[0].transAxes,
)

ortho_ma = Raster(self.right_ortho_sub_fn).read_array()
self.plot_array(ax=axa[1], array=ortho_ma, cmap="gray", add_cbar=False)
axa[1].set_title(
f"Right image\n{p['id2_dict']['id']}, {p['id2_dict']['meanproductgsd']:0.2f} m"
)
if self.right_ortho_sub_fn:
ortho_ma = Raster(self.right_ortho_sub_fn).read_array()
self.plot_array(ax=axa[1], array=ortho_ma, cmap="gray", add_cbar=False)
axa[1].set_title(
f"Right image\n{p['id2_dict']['id']}, {p['id2_dict']['meanproductgsd']:0.2f} m"
)
else:
axa[1].text(
0.5,
0.5,
"One or more required\nfiles are missing",
horizontalalignment="center",
verticalalignment="center",
transform=axa[1].transAxes,
)

fig.tight_layout()
if save_dir and fig_fn:
Expand Down
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