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Update README.md
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ledm authored Nov 28, 2023
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Expand Up @@ -342,7 +342,13 @@ sbatch -J jobID --error=logs/jobID .err --output=logs/jobID .out lotus_timeserie
```
The output and error messages will be in the `logs` directory with the jobID as the file prefix.
The job name on slurm will also be the jobID, so it's easy to tell which jobs are running.
The analysis suites will be apended as a list to the end of the command.
The analysis suites will be appended as a list to the end of the command.
In order to reduce the chance of analysing the same jobID twice, `batch_timeseries`
checks whether a job exists, either currently running or in the queue before submitting.
If a jobID exists, it is not re-submitted. However, this means that
if two versions of the same jobID are submitted one after the other
with different suite lists (`kmf`, `physics`, `bgc`), then only the first
set of suites will be run.

There is also an optional flag `-d` or `--dry_run` to test `batch_timeseries`,
which outputs the submission command to screen but does not submit the jobs.
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