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@veg

iGEM/UCSD evolutionary biology and bioinformatics group

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  1. hyphy hyphy Public

    HyPhy: Hypothesis testing using Phylogenies

    HyPhy 245 69

  2. hivtrace hivtrace Public

    JavaScript 25 15

  3. phylotree.js phylotree.js Public

    Interactive viewer of phylogenetic trees

    JavaScript 190 78

Repositories

Showing 10 of 100 repositories
  • service-datamonkey Public

    REST service driving Datamonkey3

    veg/service-datamonkey’s past year of commit activity
    Go 0 MIT 0 3 0 Updated Nov 3, 2025
  • silverback-user-manual Public

    silverback-user-manual

    veg/silverback-user-manual’s past year of commit activity
    JavaScript 0 0 0 0 Updated Nov 3, 2025
  • api-datamonkey Public

    API Spec for Datamonkey3

    veg/api-datamonkey’s past year of commit activity
    C# 0 MIT 0 1 0 Updated Oct 31, 2025
  • CAPHEINE Public

    Automated evolutionary annotation of existing datasets using Nextflow

    veg/CAPHEINE’s past year of commit activity
    Nextflow 0 MIT 0 6 0 Updated Oct 30, 2025
  • datamonkey-js Public

    Datamonkey - Run state-of-the-art statistical models through the comfort of your browser

    veg/datamonkey-js’s past year of commit activity
    JavaScript 10 9 0 1 Updated Oct 29, 2025
  • hyphy Public

    HyPhy: Hypothesis testing using Phylogenies

    veg/hyphy’s past year of commit activity
    HyPhy 245 69 14 0 Updated Oct 28, 2025
  • datamonkey-js-server Public
    veg/datamonkey-js-server’s past year of commit activity
    JavaScript 3 7 1 4 Updated Oct 25, 2025
  • DRHIP Public

    Data Reduction for HyPhy with Inference Processing. A toolkit for analyzing and summarizing HyPhy evolutionary selection analysis results

    veg/DRHIP’s past year of commit activity
    Python 0 MIT 0 1 0 Updated Oct 20, 2025
  • hivclustering Public

    Infer molecular transmission networks from pairwise distance files (part of HIV-TRACE)

    veg/hivclustering’s past year of commit activity
    Python 5 5 10 1 Updated Oct 15, 2025
  • tools-iuc Public Forked from galaxyproject/tools-iuc

    Tool Shed repositories maintained and developed by the Intergalactic Utilities Commission

    veg/tools-iuc’s past year of commit activity
    HTML 0 MIT 502 3 0 Updated Oct 15, 2025
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