first commit - vcftools

vcftools.spec

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+Name:		vcftools
+Version:	0.1.4a
+Release:	1%{?dist}
+Summary:	VCF file manipulation tools
+
+Group:		Applications/Engineering
+License:	GPLv3 
+URL:		http://vcftools.sourceforge.net/
+Source0:	http://downloads.sourceforge.net/%{name}/%{name}_v%{version}.tar.gz
+BuildRoot:	%{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
+
+BuildRequires:	zlib-devel
+
+
+%description
+A program package designed for working with VCF files, such as those
+generated by the 1000 Genomes Project. The aim of VCFtools is to
+provide methods for working with VCF files: validating, merging,
+comparing and calculate some basic population genetic statistics.
+
+%prep
+%setup -q -n %{name}_%{version}
+
+
+%build
+make %{?_smp_mflags} CPPFLAGS="%{optflags}"
+
+
+%install
+rm -rf %{buildroot}
+make install PREFIX=%{buildroot}/usr
+
+# Put Perl modules in correct location
+mkdir -p %{buildroot}/%{perl_vendorarch}
+mv %{buildroot}/usr/lib/FaSlice.pm %{buildroot}/%{perl_vendorarch}
+mv %{buildroot}/usr/lib/Vcf.pm %{buildroot}/%{perl_vendorarch}
+
+# Put single binary in correct location
+mkdir -p %{buildroot}/%{_bindir}
+mv %{_builddir}/%{name}_%{version}/cpp/vcftools %{buildroot}/%{_bindir}
+
+%clean
+rm -rf %{buildroot}
+
+
+%files
+%defattr(-,root,root,-)
+%doc README.txt
+%{_bindir}/compare-vcf
+%{_bindir}/fill-aa
+%{_bindir}/fill-an-ac
+%{_bindir}/fill-rsIDs
+%{_bindir}/merge-vcf
+%{_bindir}/query-vcf
+%{_bindir}/vcf-annotate
+%{_bindir}/vcf-concat
+%{_bindir}/vcf-convert
+%{_bindir}/vcf-isec
+%{_bindir}/vcf-sort
+%{_bindir}/vcf-stats
+%{_bindir}/vcf-subset
+%{_bindir}/vcf-to-tab
+%{_bindir}/vcf-validator
+%{_bindir}/vcftools
+%{perl_vendorarch}/FaSlice.pm
+%{perl_vendorarch}/Vcf.pm
+
+
+%changelog
+* Mon Mar 21 2011 Adam Huffman <[email protected]> - 0.1.4a-1
+- initial version
+- fix CPPFLAGS
+- fix hardcoded installation location
+