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Use toil-vg that knows about DI2 and uses outfile correctly
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@adamnovak
adamnovak committed Nov 5, 2024
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Expand Up @@ -30,7 +30,7 @@ KEEP_INTERMEDIATE_FILES=0
# Should we show stdout and stderr from tests? If so, set to "-s".
SHOW_OPT=""
# What toil-vg should we install?
TOIL_VG_PACKAGE="git+https://github.com/vgteam/toil-vg.git@d16da00b92c491f90433e151cb4f5a89a44395b8"
TOIL_VG_PACKAGE="git+https://github.com/vgteam/toil-vg.git@45782c7ba5a372e7c3587ac1c63f4895176fc828"
# What toil should we install?
# Could be something like "toil[aws,mesos]==3.20.0"
# or "git+https://github.com/DataBiosphere/toil.git@3ab74776a3adebd6db75de16985ce9d734f60743#egg=toil[aws,mesos]"
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vg CI tests complete for branch faster-gam-gaf-gbwt. View the full report here.

16 tests passed, 0 tests failed and 0 tests skipped in 17550 seconds

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