Skip to content

Add handling for complete softclip tails that end up on the far side of a self-loop edge#4531

Merged
adamnovak merged 4 commits intomasterfrom
tail-softclip-self-cycle
Mar 5, 2025
Merged

Add handling for complete softclip tails that end up on the far side of a self-loop edge#4531
adamnovak merged 4 commits intomasterfrom
tail-softclip-self-cycle

Conversation

@adamnovak
Copy link
Copy Markdown
Member

Changelog Entry

To be copied to the draft changelog by merger:

  • vg giraffe can now handle self-loop cycles that happen to fall exactly where it wants to put an all-insertion edit.

Description

This should fix #4463, or at least one cause of it.

The function I'm touching here should really be broken out and given comprehensive unit tests, though, to prevent this kind of problem from happening again.

@adamnovak adamnovak merged commit ffdb2b0 into master Mar 5, 2025
@faithokamoto faithokamoto deleted the tail-softclip-self-cycle branch August 21, 2025 19:01
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

vg pack error

1 participant