Description

• perl script for processing names.dmp and nodes.dmp

  Download names.dmp and nodes.dmp from here taxdmp.zip

Example

perl ncbi_nodes_names_to_taxanomy.pl nodes.dmp names.dmp > taxa_info.list

NOTE

See result as taxa_info.list

• First column is taxa id

  6
  

• Second is processed taxa information

  k__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Azorhizobium
  

• Third is full taxa information (taxa level; taxa id; taxanomy)

  no rank__1(root);no rank__131567(cellular organisms);superkingdom__2(Bacteria);phylum__1224(Proteobacteria);class__28211(Alphaproteobacteria);order__356(Rhizobiales);family__335928(Xanthobacteraceae);genus__6(Azorhizobium)