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V5.380/V5.388 updates
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Ezra Peisach committed Oct 2, 2023
1 parent 2fe011e commit 3f4583c
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Showing 9 changed files with 359,174 additions and 36 deletions.
172,822 changes: 172,822 additions & 0 deletions archive/mmcif_pdbx_v50-v5.380.dic
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186,122 changes: 186,122 additions & 0 deletions archive/mmcif_pdbx_v5_next-v5.388.dic
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8 changes: 7 additions & 1 deletion base/mmcif_pdbx-base.dic
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Original file line number Diff line number Diff line change
Expand Up @@ -16,7 +16,7 @@ data_mmcif_pdbx-base.dic
_pdbx_dictionary_component.datablock_id mmcif_pdbx-base.dic
_pdbx_dictionary_component.dictionary_component_id mmcif_pdbx-base.dic
_pdbx_dictionary_component.title "mmCIF/PDBx base dictionary"
_pdbx_dictionary_component.version 0.17
_pdbx_dictionary_component.version 0.18

loop_
_pdbx_dictionary_component_history.dictionary_component_id
Expand Down Expand Up @@ -143,6 +143,11 @@ Changes (ep):
+ Add em_admin.process_site and em_admin.composite_map
+ For many EM categories and EMDB_PUBLIC
;
mmcif_pdbx-base.dic 0.18 2023-10-02
;
Changes (ep):
+ Add Poky to _pdbx_nmr_softare.name enumeration
;
###############
## ATOM_SITE ##
###############
Expand Down Expand Up @@ -58744,6 +58749,7 @@ save__pdbx_nmr_software.name
'_pdbx_nmr_software.name' PLATON .
'_pdbx_nmr_software.name' PLUMED .
'_pdbx_nmr_software.name' PLUMED2 .
'_pdbx_nmr_software.name' 'Poky' .
'_pdbx_nmr_software.name' PONDEROSA .
'_pdbx_nmr_software.name' PONDEROSA-C/S .
'_pdbx_nmr_software.name' POSE .
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9 changes: 8 additions & 1 deletion base/mmcif_pdbx_v50-header.dic
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Expand Up @@ -17,7 +17,7 @@ data_mmcif_pdbx.dic

_dictionary.title mmcif_pdbx.dic
_dictionary.datablock_id mmcif_pdbx.dic
_dictionary.version 5.379
_dictionary.version 5.380
#
loop_
_dictionary_history.version
Expand Down Expand Up @@ -2812,3 +2812,10 @@ Changes (ep):
+ Add 'I3' to _em_software.name enumeration
+ Add "RIGAKU HyPix-Arc 150" to _diffrn_detector.type
;
5.380 2023-10-02
;
Changes (ep):
+ Extend _pdbx_audit_support.funding_organization enumeration
+ PTM extension updates to enumerations
+ Add Poky to _pdbx_nmr_softare.name enumeration
;
9 changes: 8 additions & 1 deletion base/mmcif_pdbx_v5_next-header.dic
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Expand Up @@ -17,7 +17,7 @@ data_mmcif_pdbx.dic

_dictionary.title mmcif_pdbx.dic
_dictionary.datablock_id mmcif_pdbx.dic
_dictionary.version 5.387
_dictionary.version 5.388
#
loop_
_dictionary_history.version
Expand Down Expand Up @@ -2950,3 +2950,10 @@ Changes (ep):
+ Add 'I3' to _em_software.name enumeration
+ Add "RIGAKU HyPix-Arc 150" to _diffrn_detector.type
;
5.388 2023-10-02
;
Changes (ep):
+ Extend _pdbx_audit_support.funding_organization enumeration
+ PTM extension updates to enumerations
+ Add Poky to _pdbx_nmr_softare.name enumeration
;
88 changes: 76 additions & 12 deletions dist/mmcif_pdbx_v50.dic
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88 changes: 76 additions & 12 deletions dist/mmcif_pdbx_v5_next.dic
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25 changes: 22 additions & 3 deletions extensions/pdbx_audit_support-extension.dic
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Expand Up @@ -15,7 +15,7 @@ data_pdbx_audit_support-extension.dic
_pdbx_dictionary_component.datablock_id mmcif_pdbx_audit_support-extension.dic
_pdbx_dictionary_component.dictionary_component_id mmcif_pdbx_audit_support-extension.dic
_pdbx_dictionary_component.title "mmCIF/PDBx Audit support extension"
_pdbx_dictionary_component.version 0.16
_pdbx_dictionary_component.version 0.17

loop_
_pdbx_dictionary_component_history.dictionary_component_id
Expand Down Expand Up @@ -123,6 +123,15 @@ Changes (EP):
+ Correct typo in 'National Aeronautics Space Administration (NASA, United States)'
+ Add EMDB_PUBLIC for pdbx_audit_support
;
mmcif_pdbx_audit_support-extension.dic 0.17 2023-10-01
;
Changes (EP):
+ Add 'Commonwealth Scientific and Industrial Research Organisation (CSIRO)',
'Flanders Innovation & Entrepreneurship (VLAIO)', 'Helen Hay Whitney Foundation',
'Innoviris', 'Institut National de la Sante et de la Recherche Medicale (INSERM)',
'Service public de Wallonie', 'Shapiro-Silverberg Fund for the Advancement of Translational Research'
+ Correct 'Foundation for Science and Technology' Portugal vs UK
;

########################
## PDBX_AUDIT_SUPPORT ##
Expand Down Expand Up @@ -255,6 +264,7 @@ save__pdbx_audit_support.funding_organization
'_pdbx_audit_support.funding_organization' 'Columbia Technology Ventures' 'United States'
'_pdbx_audit_support.funding_organization' 'Comision Nacional Cientifica y Technologica (CONICYT)' Chile
'_pdbx_audit_support.funding_organization' 'Commonwealth Scholarship Commission (United Kingdom)' 'United Kingdom'
'_pdbx_audit_support.funding_organization' 'Commonwealth Scientific and Industrial Research Organisation (CSIRO)' Australia
'_pdbx_audit_support.funding_organization' 'Compagnia di San Paolo Foundation' Italy
'_pdbx_audit_support.funding_organization' 'Comunidad de Madrid' Spain
'_pdbx_audit_support.funding_organization' 'Consejo Nacional de Ciencia y Tecnologia (CONACYT)' Mexico
Expand Down Expand Up @@ -305,17 +315,19 @@ save__pdbx_audit_support.funding_organization
'_pdbx_audit_support.funding_organization' 'European Research Council (ERC)' 'European Union'
'_pdbx_audit_support.funding_organization' 'European Union (EU)' 'European Union'
'_pdbx_audit_support.funding_organization' 'F. Hoffmann-La Roche LTD' Switzerland
'_pdbx_audit_support.funding_organization' 'Fundacao para a Ciencia e a Tecnologia' Portugal
'_pdbx_audit_support.funding_organization' 'Finnish Cultural Foundation' Finland
'_pdbx_audit_support.funding_organization' 'Flanders Innovation & Entrepreneurship (VLAIO)' Belgium
'_pdbx_audit_support.funding_organization' 'Florence Instruct-ERIC Center' Italy
'_pdbx_audit_support.funding_organization' 'Fondation ARC' France
'_pdbx_audit_support.funding_organization' 'Foundation for Barnes-Jewish Hospital' 'United States'
'_pdbx_audit_support.funding_organization' 'Foundation for Medical Research (France)' France
'_pdbx_audit_support.funding_organization' 'Foundation for Polish Science' Poland

'_pdbx_audit_support.funding_organization' 'Fondation pour la Recherche Medicale (FRM)' France
'_pdbx_audit_support.funding_organization' 'Foundation for Science and Technology (FCT)' 'United Kingdom'
'_pdbx_audit_support.funding_organization' 'Foundation for Science and Technology (FCT)' Portugal
'_pdbx_audit_support.funding_organization' 'Foundation for Science and Technology (FST)' 'United Kingdom'
'_pdbx_audit_support.funding_organization' 'Fondazione CARIPLO' Italy
'_pdbx_audit_support.funding_organization' 'Fondazione Ricerca Fibrosi Cistica' Italy
'_pdbx_audit_support.funding_organization' 'Fonds de Recherche du Quebec - Nature et Technologies (FRQNT)' Canada
'_pdbx_audit_support.funding_organization' 'Fonds de Recherche du Quebec - Sante (FRQS)' Canada
# Being deprecated
Expand All @@ -329,6 +341,7 @@ save__pdbx_audit_support.funding_organization
'_pdbx_audit_support.funding_organization' 'French National Institute of Agricultural Research (INRAE)' France
'_pdbx_audit_support.funding_organization' 'French National Research Agency' France
'_pdbx_audit_support.funding_organization' 'Friedreichs Ataxia Research Alliance (FARA)' 'United States'
'_pdbx_audit_support.funding_organization' 'Fundacao para a Ciencia e a Tecnologia' Portugal
'_pdbx_audit_support.funding_organization' 'Future Leader Fellowship' 'United Kingdom'

'_pdbx_audit_support.funding_organization' 'Gatsby Charitable Foundation' 'United Kingdom'
Expand All @@ -347,6 +360,7 @@ save__pdbx_audit_support.funding_organization
'_pdbx_audit_support.funding_organization' 'H2020 Marie Curie Actions of the European Commission' 'European Union'
'_pdbx_audit_support.funding_organization' 'Health-Holland' 'Netherlands'
'_pdbx_audit_support.funding_organization' 'Health Research Council (HRC)' 'New Zealand'
'_pdbx_audit_support.funding_organization' 'Helen Hay Whitney Foundation' 'United States'
'_pdbx_audit_support.funding_organization' 'Hellenic Foundation for Research and Innovation (HFRI)' Greece
'_pdbx_audit_support.funding_organization' 'Helmholtz Association' Germany
'_pdbx_audit_support.funding_organization' 'Heritage Medical Research Institute' 'United States'
Expand All @@ -361,6 +375,7 @@ save__pdbx_audit_support.funding_organization
'_pdbx_audit_support.funding_organization' 'Imperial College London' 'United Kingdom'
'_pdbx_audit_support.funding_organization' 'Independent Research Fund Denmark - Technology and Production Sciences' Denmark
'_pdbx_audit_support.funding_organization' 'Indian Council of Medical Research' India
'_pdbx_audit_support.funding_organization' 'Innoviris' Belgium
'_pdbx_audit_support.funding_organization' 'Instruct-ERIC Center (Strasbourg Centre)' France
'_pdbx_audit_support.funding_organization' 'Instruct-ERIC Center (Helsinki)' Finland
'_pdbx_audit_support.funding_organization' iNEXT 'European Union'
Expand All @@ -369,6 +384,7 @@ save__pdbx_audit_support.funding_organization
'_pdbx_audit_support.funding_organization' 'Innovate UK' 'United Kingdom'
'_pdbx_audit_support.funding_organization' 'Innovative Medicines Initiative' Switzerland
'_pdbx_audit_support.funding_organization' 'Institut Laue-Langevin' France
'_pdbx_audit_support.funding_organization' 'Institut National de la Sante et de la Recherche Medicale (INSERM)' France
'_pdbx_audit_support.funding_organization' 'Institut National du Cancer (inCA)' France
'_pdbx_audit_support.funding_organization' 'Institute for Integrative Biology of the Cell (I2BC)' France
'_pdbx_audit_support.funding_organization' 'Institute of Chemical Physics Russian Academy of Science' 'Russian Federation'
Expand Down Expand Up @@ -556,6 +572,9 @@ save__pdbx_audit_support.funding_organization

'_pdbx_audit_support.funding_organization' 'Science and Technology Funding Council' 'United Kingdom'
'_pdbx_audit_support.funding_organization' 'Seneca Foundation' 'United States'

'_pdbx_audit_support.funding_organization' 'Service public de Wallonie' Belgium
'_pdbx_audit_support.funding_organization' 'Shapiro-Silverberg Fund for the Advancement of Translational Research' 'United States'
'_pdbx_audit_support.funding_organization' 'Shirley Boyde Foundation' 'Hong Kong'
'_pdbx_audit_support.funding_organization' 'Sigrid Juselius Foundation' Finland
'_pdbx_audit_support.funding_organization' 'Simons Foundation' 'United States'
Expand Down
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