Dictionary update

wwpdb-dictionaries · Oct 25, 2023 · 7108c8a · 7108c8a
1 parent 6da8acb
commit 7108c8a
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Showing 7 changed files with 22 additions and 101 deletions.
diff --git a/archive/mmcif_pdbx_v50-v5.381.dic b/archive/mmcif_pdbx_v50-v5.381.dic
@@ -3075,7 +3075,7 @@ Changes (ep):
   + Add "MAR CCD 300 mm" to _diffrn_detector.type
   + Add definitions for _pdbx_chem_comp_depositor.upload_file_name,
     _pdbx_chem_comp_depositor.upload_file_type
-  + Add _pdbx_chem_comp_instance_depositor_info.pdbx_PDB_ins_code
+  + Add example for _em_start_model.emdb_id
 ;
 
 #
@@ -3785,8 +3785,7 @@ Changes (ep):
   + Add "MAR CCD 300 mm" to _diffrn_detector.type
   + Add definitions for _pdbx_chem_comp_depositor.upload_file_name,
     _pdbx_chem_comp_depositor.upload_file_type
-  + Change _pdbx_chem_comp_instance_depositor_info.PDB_ins_code to
-    _pdbx_chem_comp_instance_depositor_info.pdbx_PDB_ins_code to match usage
+  + Add example for _em_start_model.emdb_id
 ;
 
 mmcif_xfel_extensions-v3.dic            0.0.1  2023-05-31  
@@ -124720,6 +124719,8 @@ save__em_start_model.emdb_id
    #
    _item_type.code  emd_id
    #
+   _item_examples.case  EMD-12345
+   #
 save_
 #
 save__em_start_model.id
@@ -131330,23 +131331,6 @@ save__pdbx_chem_comp_instance_depositor_info.PDB_ins_code
    #
 save_
 #
-save__pdbx_chem_comp_instance_depositor_info.pdbx_PDB_ins_code
-   _item_description.description  
-;   Optional element of the chemical component instance identifier.
-
-    This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the
-    ATOM_SITE category.
-;
-
-   #
-   _item.name            "_pdbx_chem_comp_instance_depositor_info.pdbx_PDB_ins_code"
-   _item.category_id     pdbx_chem_comp_instance_depositor_info
-   _item.mandatory_code  no
-   #
-   _item_type.code  code
-   #
-save_
-#
 save__pdbx_chem_comp_instance_depositor_info.auth_asym_id
    _item_description.description  
 ;   An element of the chemical component instance identifier.

diff --git a/archive/mmcif_pdbx_v5_next-v5.389.dic b/archive/mmcif_pdbx_v5_next-v5.389.dic
@@ -3219,7 +3219,7 @@ Changes (ep):
   + Add "MAR CCD 300 mm" to _diffrn_detector.type
   + Add definitions for _pdbx_chem_comp_depositor.upload_file_name,
     _pdbx_chem_comp_depositor.upload_file_type
-  + Add _pdbx_chem_comp_instance_depositor_info.pdbx_PDB_ins_code
+  + Add example for _em_start_model.emdb_id
 ;
 
 #
@@ -3929,8 +3929,7 @@ Changes (ep):
   + Add "MAR CCD 300 mm" to _diffrn_detector.type
   + Add definitions for _pdbx_chem_comp_depositor.upload_file_name,
     _pdbx_chem_comp_depositor.upload_file_type
-  + Change _pdbx_chem_comp_instance_depositor_info.PDB_ins_code to
-    _pdbx_chem_comp_instance_depositor_info.pdbx_PDB_ins_code to match usage
+  + Add example for _em_start_model.emdb_id
 ;
 
 mmcif_xfel_extensions-v3.dic            0.0.1  2023-05-31  
@@ -124970,6 +124969,8 @@ save__em_start_model.emdb_id
    #
    _item_type.code  emd_id
    #
+   _item_examples.case  EMD-12345
+   #
 save_
 #
 save__em_start_model.id
@@ -131580,23 +131581,6 @@ save__pdbx_chem_comp_instance_depositor_info.PDB_ins_code
    #
 save_
 #
-save__pdbx_chem_comp_instance_depositor_info.pdbx_PDB_ins_code
-   _item_description.description  
-;   Optional element of the chemical component instance identifier.
-
-    This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the
-    ATOM_SITE category.
-;
-
-   #
-   _item.name            "_pdbx_chem_comp_instance_depositor_info.pdbx_PDB_ins_code"
-   _item.category_id     pdbx_chem_comp_instance_depositor_info
-   _item.mandatory_code  no
-   #
-   _item_type.code  code
-   #
-save_
-#
 save__pdbx_chem_comp_instance_depositor_info.auth_asym_id
    _item_description.description  
 ;   An element of the chemical component instance identifier.

diff --git a/base/mmcif_pdbx-base.dic b/base/mmcif_pdbx-base.dic
@@ -154,8 +154,7 @@ Changes (ep):
   + Add "MAR CCD 300 mm" to _diffrn_detector.type
   + Add definitions for _pdbx_chem_comp_depositor.upload_file_name,
     _pdbx_chem_comp_depositor.upload_file_type
-  + Change _pdbx_chem_comp_instance_depositor_info.PDB_ins_code to
-    _pdbx_chem_comp_instance_depositor_info.pdbx_PDB_ins_code to match usage
+  + Add example for _em_start_model.emdb_id
 ;
 ###############
 ## ATOM_SITE ##
@@ -103286,6 +103285,7 @@ save__em_start_model.emdb_id
     _item.category_id           em_start_model
     _item.mandatory_code        no
     _item_type.code             emd_id
+    _item_examples.case         EMD-12345
      save_
 
 save__em_start_model.id
@@ -109206,23 +109206,7 @@ save__pdbx_chem_comp_instance_depositor_info.PDB_ins_code
     _item.category_id           pdbx_chem_comp_instance_depositor_info
     _item.mandatory_code        no
     _item_type.code 		code
-#    _item_linked.child_name     '_pdbx_chem_comp_instance_depositor_info.pdbx_PDB_ins_code'
-#    _item_linked.parent_name    '_atom_site.pdbx_PDB_ins_code'
-    save_
-##
-
-save__pdbx_chem_comp_instance_depositor_info.pdbx_PDB_ins_code
-    _item_description.description
-;   Optional element of the chemical component instance identifier.
-
-    This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the
-    ATOM_SITE category.
-;
-    _item.name                '_pdbx_chem_comp_instance_depositor_info.pdbx_PDB_ins_code'
-    _item.category_id           pdbx_chem_comp_instance_depositor_info
-    _item.mandatory_code        no
-    _item_type.code 		code
-#    _item_linked.child_name     '_pdbx_chem_comp_instance_depositor_info.pdbx_PDB_ins_code'
+#    _item_linked.child_name     '_pdbx_chem_comp_instance_depositor_info.PDB_ins_code'
 #    _item_linked.parent_name    '_atom_site.pdbx_PDB_ins_code'
     save_
 ##
@@ -109240,6 +109224,7 @@ save__pdbx_chem_comp_instance_depositor_info.auth_asym_id
 #    _item_linked.child_name     '_pdbx_chem_comp_instance_depositor_info.auth_asym_id'
 #    _item_linked.parent_name    '_atom_site.auth_asym_id'
      save_
+##
 
 save__pdbx_chem_comp_instance_depositor_info.auth_seq_id
     _item_description.description

diff --git a/base/mmcif_pdbx_v50-header.dic b/base/mmcif_pdbx_v50-header.dic
@@ -2827,5 +2827,5 @@ Changes (ep):
   + Add "MAR CCD 300 mm" to _diffrn_detector.type
   + Add definitions for _pdbx_chem_comp_depositor.upload_file_name,
     _pdbx_chem_comp_depositor.upload_file_type
-  + Add _pdbx_chem_comp_instance_depositor_info.pdbx_PDB_ins_code
+  + Add example for _em_start_model.emdb_id
 ;
diff --git a/base/mmcif_pdbx_v5_next-header.dic b/base/mmcif_pdbx_v5_next-header.dic
@@ -2965,5 +2965,5 @@ Changes (ep):
   + Add "MAR CCD 300 mm" to _diffrn_detector.type
   + Add definitions for _pdbx_chem_comp_depositor.upload_file_name,
     _pdbx_chem_comp_depositor.upload_file_type
-  + Add _pdbx_chem_comp_instance_depositor_info.pdbx_PDB_ins_code
+  + Add example for _em_start_model.emdb_id
 ;
diff --git a/dist/mmcif_pdbx_v50.dic b/dist/mmcif_pdbx_v50.dic
@@ -3075,7 +3075,7 @@ Changes (ep):
   + Add "MAR CCD 300 mm" to _diffrn_detector.type
   + Add definitions for _pdbx_chem_comp_depositor.upload_file_name,
     _pdbx_chem_comp_depositor.upload_file_type
-  + Add _pdbx_chem_comp_instance_depositor_info.pdbx_PDB_ins_code
+  + Add example for _em_start_model.emdb_id
 ;
 
 #
@@ -3785,8 +3785,7 @@ Changes (ep):
   + Add "MAR CCD 300 mm" to _diffrn_detector.type
   + Add definitions for _pdbx_chem_comp_depositor.upload_file_name,
     _pdbx_chem_comp_depositor.upload_file_type
-  + Change _pdbx_chem_comp_instance_depositor_info.PDB_ins_code to
-    _pdbx_chem_comp_instance_depositor_info.pdbx_PDB_ins_code to match usage
+  + Add example for _em_start_model.emdb_id
 ;
 
 mmcif_xfel_extensions-v3.dic            0.0.1  2023-05-31  
@@ -124720,6 +124719,8 @@ save__em_start_model.emdb_id
    #
    _item_type.code  emd_id
    #
+   _item_examples.case  EMD-12345
+   #
 save_
 #
 save__em_start_model.id
@@ -131330,23 +131331,6 @@ save__pdbx_chem_comp_instance_depositor_info.PDB_ins_code
    #
 save_
 #
-save__pdbx_chem_comp_instance_depositor_info.pdbx_PDB_ins_code
-   _item_description.description  
-;   Optional element of the chemical component instance identifier.
-
-    This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the
-    ATOM_SITE category.
-;
-
-   #
-   _item.name            "_pdbx_chem_comp_instance_depositor_info.pdbx_PDB_ins_code"
-   _item.category_id     pdbx_chem_comp_instance_depositor_info
-   _item.mandatory_code  no
-   #
-   _item_type.code  code
-   #
-save_
-#
 save__pdbx_chem_comp_instance_depositor_info.auth_asym_id
    _item_description.description  
 ;   An element of the chemical component instance identifier.

diff --git a/dist/mmcif_pdbx_v5_next.dic b/dist/mmcif_pdbx_v5_next.dic
@@ -3219,7 +3219,7 @@ Changes (ep):
   + Add "MAR CCD 300 mm" to _diffrn_detector.type
   + Add definitions for _pdbx_chem_comp_depositor.upload_file_name,
     _pdbx_chem_comp_depositor.upload_file_type
-  + Add _pdbx_chem_comp_instance_depositor_info.pdbx_PDB_ins_code
+  + Add example for _em_start_model.emdb_id
 ;
 
 #
@@ -3929,8 +3929,7 @@ Changes (ep):
   + Add "MAR CCD 300 mm" to _diffrn_detector.type
   + Add definitions for _pdbx_chem_comp_depositor.upload_file_name,
     _pdbx_chem_comp_depositor.upload_file_type
-  + Change _pdbx_chem_comp_instance_depositor_info.PDB_ins_code to
-    _pdbx_chem_comp_instance_depositor_info.pdbx_PDB_ins_code to match usage
+  + Add example for _em_start_model.emdb_id
 ;
 
 mmcif_xfel_extensions-v3.dic            0.0.1  2023-05-31  
@@ -124970,6 +124969,8 @@ save__em_start_model.emdb_id
    #
    _item_type.code  emd_id
    #
+   _item_examples.case  EMD-12345
+   #
 save_
 #
 save__em_start_model.id
@@ -131580,23 +131581,6 @@ save__pdbx_chem_comp_instance_depositor_info.PDB_ins_code
    #
 save_
 #
-save__pdbx_chem_comp_instance_depositor_info.pdbx_PDB_ins_code
-   _item_description.description  
-;   Optional element of the chemical component instance identifier.
-
-    This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the
-    ATOM_SITE category.
-;
-
-   #
-   _item.name            "_pdbx_chem_comp_instance_depositor_info.pdbx_PDB_ins_code"
-   _item.category_id     pdbx_chem_comp_instance_depositor_info
-   _item.mandatory_code  no
-   #
-   _item_type.code  code
-   #
-save_
-#
 save__pdbx_chem_comp_instance_depositor_info.auth_asym_id
    _item_description.description  
 ;   An element of the chemical component instance identifier.