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config.sh
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config.sh
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VERSION="v0.3"
DEPRECATED_SPATIAL_CELL_SUMMARIES=input-data/${VERSION}/spatial-cell-summaries.jsonld
DEPRECATED_BULK_CELL_SUMMARIES=input-data/${VERSION}/bulk-cell-summaries.jsonld
DEPRECATED_CORRIDORS=raw-data/${VERSION}/corridors.jsonld
DEPRECATED_REGISTRATIONS=input-data/${VERSION}/ctpop-registrations.jsonld
DEPRECATED_BULK_CELL_SUMMARY_DATASETS=input-data/${VERSION}/bulk-cell-summaries.csv
DEPRECATED_SPATIAL_CELL_SUMMARY_DATASETS=input-data/${VERSION}/spatial-cell-summaries.csv
REGISTRATIONS="${DEPRECATED_REGISTRATIONS} \
https://apps.humanatlas.io/hra-api/v1/hubmap/rui_locations.jsonld?token=${HUBMAP_TOKEN}&cache=true \
https://apps.humanatlas.io/hra-api/v1/sennet/rui_locations.jsonld?token=${SENNET_TOKEN}&cache=true \
https://apps.humanatlas.io/hra-api/v1/gtex/rui_locations.jsonld \
https://hubmapconsortium.github.io/hra-registrations/federated/rui_locations.jsonld"
PUBLICATIONS="https://docs.google.com/spreadsheets/d/1MK9KMPAFRHN6aU_e1ghApcbABAdkLGRTiaSUkliLNnw/export?format=csv&gid=1240375199"
APPROVED_SOURCES="HuBMAP SenNet GTEx"
CELL_SUMMARIES="input-data/${VERSION}/bulk-cell-summaries.jsonld input-data/${VERSION}/spatial-cell-summaries.jsonld"
CELL_SUMMARY_DATASETS="input-data/${VERSION}/bulk-cell-summaries.csv input-data/${VERSION}/spatial-cell-summaries.csv"