Skip to content
@x-atlas-consortia

Atlas Consortia

A place for consortia who produce biologic data organized into atlases to share software resources.

Pinned Loading

  1. ubkg-neo4j ubkg-neo4j Public

    A container implementation to serve the Unified Biomedical Knowledge Graph in Neo4j

    Shell 1

  2. ubkg-etl ubkg-etl Public

    A framework that combines data from the UMLS with assertions from other data sources into a set of CSV files that can be imported into neo4j to build a Unified Biomedical Knowledge Graph (UBKG)

    Python 3

  3. data-ingest-board data-ingest-board Public

    The UI App for HuBMAP and Sennet Data Publishing Dashboard

    JavaScript

  4. hra-api hra-api Public

    HRA-API: Human Reference Atlas API

    Jupyter Notebook

  5. hra-pop hra-pop Public

    HRApop

    JavaScript 1

  6. hs-ontology-api hs-ontology-api Public

    Ontology API built on top of the UBKG API and shared by HuBMAP and SenNet projects

    Python

Repositories

Showing 10 of 27 repositories
  • donor-metadata Public

    Application used to prepare de-identified and encoded donor metadata to include with tissue samples registered with HuBMAP or SenNet

    x-atlas-consortia/donor-metadata’s past year of commit activity
    Python 0 MIT 0 1 0 Updated Oct 16, 2024
  • hs-ontology-api Public

    Ontology API built on top of the UBKG API and shared by HuBMAP and SenNet projects

    x-atlas-consortia/hs-ontology-api’s past year of commit activity
    Python 0 0 5 1 Updated Oct 16, 2024
  • data-ingest-board Public

    The UI App for HuBMAP and Sennet Data Publishing Dashboard

    x-atlas-consortia/data-ingest-board’s past year of commit activity
    JavaScript 0 MIT 0 21 0 Updated Oct 16, 2024
  • hra-api Public

    HRA-API: Human Reference Atlas API

    x-atlas-consortia/hra-api’s past year of commit activity
    Jupyter Notebook 0 MIT 0 5 0 Updated Oct 11, 2024
  • hra-notebooks Public

    Fun and Interesting Python Notebooks that use the HRA

    x-atlas-consortia/hra-notebooks’s past year of commit activity
    Jupyter Notebook 0 MIT 0 1 0 Updated Oct 4, 2024
  • hra-jupyter-widgets Public

    HRA Web Components wrapped as Jupyter Widgets

    x-atlas-consortia/hra-jupyter-widgets’s past year of commit activity
    Python 0 MIT 0 1 0 Updated Oct 3, 2024
  • hra-lit Public

    HRAlit

    x-atlas-consortia/hra-lit’s past year of commit activity
    JavaScript 0 MIT 0 0 0 Updated Sep 23, 2024
  • elastic-analysis Public

    Scripts for analyzing Elastic Search indexes, initially those used for HuBMAP

    x-atlas-consortia/elastic-analysis’s past year of commit activity
    Python 0 MIT 0 1 0 Updated Sep 17, 2024
  • hra-pop Public

    HRApop

    x-atlas-consortia/hra-pop’s past year of commit activity
    JavaScript 0 MIT 1 42 1 Updated Sep 12, 2024
  • uuid-api Public

    A restful web service used to create and query UUIDs used across HuBMAP and SenNet

    x-atlas-consortia/uuid-api’s past year of commit activity
    Python 2 MIT 0 7 0 Updated Sep 12, 2024
View all repositories

Top languages

Loading…

Most used topics

Loading…