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New long table for UMAP plot for biomarkers #79

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andreasbueckle opened this issue Mar 25, 2024 · 1 comment

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Paper Submission

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andreasbueckle commented Mar 25, 2024 •

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Make query to output long table where each row is a cell type and a biomarker. UMAP: each dot will be a cell type.
dataset_id | cell_label | cell_id | organ | tool | b_label | b_mean_expression

Link to existing query: https://github.com/hubmapconsortium/ccf-grlc/blob/main/hra-pop/datasets-with-ct.rq

The text was updated successfully, but these errors were encountered:

andreasbueckle assigned bherr2

andreasbueckle added this to the Paper Submission milestone

andreasbueckle changed the title ~~New long table for UMAP plot~~ New long table for UMAP plot for biomarkers

Contributor

bherr2 commented Mar 25, 2024

Query: https://github.com/x-atlas-consortia/hra-pop/blob/main/queries/atlas-ad-hoc/datasets-ct-bm-data.rq
Report: https://github.com/x-atlas-consortia/hra-pop/blob/main/output-data/v0.9.1/reports/atlas-ad-hoc/datasets-ct-bm-data.csv

bherr2 removed their assignment

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