SCNV provides functions for performancing CNV analysis with Single-cell DNA sequencing. Current pipeline majorly facilitates the binless segemenation on single-cell sequencing based on nonhomogeneous poisson process (NHPP). These CNV breakpoints may be used as surrogates for SNVs.
https://github.com/xfwang/SCNV/tree/master/scripts
Please cite the following article if you use SCNV in your research:
Wang X. et al. DNA copy number profiling using single cell sequencing. Briefings in Bioinformatics (In Press)