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vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/SingleCells/File/MatrixHeader.html
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<!DOCTYPE html> | ||
<html> | ||
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<head> | ||
<title>BioNovoGene.Analytical.MassSpectrometry.SingleCells.File.MatrixHeader</title> | ||
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> | ||
<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes" /> | ||
<link rel="stylesheet" type="text/css" href="https://mzkit.org/assets/js/page.css"> | ||
</head> | ||
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<body> | ||
<div class="container"> | ||
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<table style="width: 100%;"> | ||
<tr> | ||
<td>MatrixHeader {BioNovoGene.Analytical.MassSpectrometry.SingleCells.File}</td> | ||
<td style="text-align: right;">.NET clr documentation</td> | ||
</tr> | ||
</table> | ||
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<h2>MatrixHeader</h2> | ||
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<h3>Description</h3> | ||
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<h3>Declare</h3> | ||
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<pre> | ||
<code id="clr_ts"> | ||
# namespace BioNovoGene.Analytical.MassSpectrometry.SingleCells.File | ||
export class MatrixHeader { | ||
# get count of the ion feature size under current mass <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/SingleCells/File/MatrixHeader.html">MatrixHeader</a>.<a href="#">tolerance</a> | ||
featureSize: integer; | ||
# the matrix data type of current object, value of this property could be one of the flag value: | ||
# | ||
# 1. <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Assembly/mzData/mzWebCache/FileApplicationClass.html">FileApplicationClass</a>.<a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Assembly/mzData/mzWebCache/FileApplicationClass.html">MSImaging</a> 2d spatial data | ||
# 2. <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Assembly/mzData/mzWebCache/FileApplicationClass.html">FileApplicationClass</a>.<a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Assembly/mzData/mzWebCache/FileApplicationClass.html">MSImaging3D</a> 3d spatial data | ||
# 3. <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Assembly/mzData/mzWebCache/FileApplicationClass.html">FileApplicationClass</a>.<a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Assembly/mzData/mzWebCache/FileApplicationClass.html">SingleCellsMetabolomics</a> single cell matrix data | ||
matrixType: <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Assembly/mzData/mzWebCache/FileApplicationClass.html">FileApplicationClass</a>; | ||
# m/z vector in numeric format of round to digit 4, this ion m/z | ||
# feature list is generated under the current mass | ||
# <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/SingleCells/File/MatrixHeader.html">MatrixHeader</a>.<a href="#">tolerance</a>. | ||
mz: double; | ||
mzmax: double; | ||
mzmin: double; | ||
# number of the spots | ||
numSpots: integer; | ||
# the script string of the mz diff tolerance for <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/SingleCells/File/MatrixHeader.html">MatrixHeader</a>.<a href="#">mz</a> | ||
tolerance: string; | ||
} | ||
</code> | ||
</pre> | ||
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<h3>.NET clr type reference tree</h3> | ||
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<ol> | ||
<li>use by <i>property</i> member <code>matrixType</code>: <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Assembly/mzData/mzWebCache/FileApplicationClass.html">FileApplicationClass</a></li> | ||
</ol> | ||
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<hr /> | ||
<div style="text-align: center;">[Package <em>{$package}</em> version {$version} <a | ||
href="../{$package}.html">Index</a>] | ||
</div> | ||
</div> | ||
</body> | ||
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<script type="text/javascript" src="https://mzkit.org/assets/js/R_syntax.js"></script> | ||
<script type="text/javascript" src="https://mzkit.org/assets/js/highlights.js"></script> | ||
<script type="text/javascript">r_highlights("clr_ts");</script> | ||
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</html> |
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vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/SingleCells/File/MatrixReader.html
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<!DOCTYPE html> | ||
<html> | ||
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<head> | ||
<title>BioNovoGene.Analytical.MassSpectrometry.SingleCells.File.MatrixReader</title> | ||
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> | ||
<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes" /> | ||
<link rel="stylesheet" type="text/css" href="https://mzkit.org/assets/js/page.css"> | ||
</head> | ||
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<body> | ||
<div class="container"> | ||
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<table style="width: 100%;"> | ||
<tr> | ||
<td>MatrixReader {BioNovoGene.Analytical.MassSpectrometry.SingleCells.File}</td> | ||
<td style="text-align: right;">.NET clr documentation</td> | ||
</tr> | ||
</table> | ||
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<h2>MatrixReader</h2> | ||
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<h3>Description</h3> | ||
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<p>A lazy binary data matrix reader for the singlecells/spatial data</p> | ||
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<h3>Declare</h3> | ||
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<pre> | ||
<code id="clr_ts"> | ||
# namespace BioNovoGene.Analytical.MassSpectrometry.SingleCells.File | ||
export class MatrixReader { | ||
dim_size: <a href="/vignettes/clr/System/Drawing/Size.html">Size</a>; | ||
# number of the ion features | ||
featureSize: integer; | ||
# A numeric vector of the ion features m/z | ||
ionSet: double; | ||
# <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/SingleCells/Deconvolute/MzMatrix.html">MzMatrix</a>.<a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Assembly/mzData/mzWebCache/FileApplicationClass.html">matrixType</a> | ||
matrixType: <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Assembly/mzData/mzWebCache/FileApplicationClass.html">FileApplicationClass</a>; | ||
# the number of the single cells or spatial spot data | ||
spots: integer; | ||
# the description text of the mass tolerance error | ||
tolerance: string; | ||
} | ||
</code> | ||
</pre> | ||
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<h3>.NET clr type reference tree</h3> | ||
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<ol> | ||
<li>use by <i>property</i> member <code>dim_size</code>: <a href="/vignettes/clr/System/Drawing/Size.html">Size</a></li> | ||
<li>use by <i>property</i> member <code>matrixType</code>: <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Assembly/mzData/mzWebCache/FileApplicationClass.html">FileApplicationClass</a></li> | ||
</ol> | ||
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<hr /> | ||
<div style="text-align: center;">[Package <em>{$package}</em> version {$version} <a | ||
href="../{$package}.html">Index</a>] | ||
</div> | ||
</div> | ||
</body> | ||
|
||
<script type="text/javascript" src="https://mzkit.org/assets/js/R_syntax.js"></script> | ||
<script type="text/javascript" src="https://mzkit.org/assets/js/highlights.js"></script> | ||
<script type="text/javascript">r_highlights("clr_ts");</script> | ||
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</html> |
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74 changes: 74 additions & 0 deletions
74
vignettes/clr/BioNovoGene/BioDeep/Chemistry/SpectraInfo.html
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<!DOCTYPE html> | ||
<html> | ||
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<head> | ||
<title>BioNovoGene.BioDeep.Chemistry.SpectraInfo</title> | ||
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> | ||
<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes" /> | ||
<link rel="stylesheet" type="text/css" href="https://mzkit.org/assets/js/page.css"> | ||
</head> | ||
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<body> | ||
<div class="container"> | ||
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<table style="width: 100%;"> | ||
<tr> | ||
<td>SpectraInfo {BioNovoGene.BioDeep.Chemistry}</td> | ||
<td style="text-align: right;">.NET clr documentation</td> | ||
</tr> | ||
</table> | ||
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<h2>SpectraInfo</h2> | ||
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<h3>Description</h3> | ||
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<p>The reference spectra data which is parsed from the MoNA database</p> | ||
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<p>is a collection of the mass spectrum <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Math/Spectra/ms2.html">ms2</a> data.</p> | ||
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<h3>Declare</h3> | ||
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<pre> | ||
<code id="clr_ts"> | ||
# namespace BioNovoGene.BioDeep.Chemistry | ||
export class SpectraInfo { | ||
collision_energy: string; | ||
column: string; | ||
flow_gradient: string; | ||
flow_rate: string; | ||
fragmentation_mode: string; | ||
instrument: string; | ||
instrument_type: string; | ||
ion_mode: string; | ||
ionization: string; | ||
MassPeaks: <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Math/Spectra/ms2.html">ms2[]</a>; | ||
MsLevel: string; | ||
mz: double; | ||
precursor_type: string; | ||
resolution: string; | ||
retention_time: string; | ||
solvent_a: string; | ||
solvent_b: string; | ||
} | ||
</code> | ||
</pre> | ||
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<h3>.NET clr type reference tree</h3> | ||
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<ol> | ||
<li>use by <i>property</i> member <code>MassPeaks</code>: <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Math/Spectra/ms2.html">ms2</a></li> | ||
</ol> | ||
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<hr /> | ||
<div style="text-align: center;">[Package <em>{$package}</em> version {$version} <a | ||
href="../{$package}.html">Index</a>] | ||
</div> | ||
</div> | ||
</body> | ||
|
||
<script type="text/javascript" src="https://mzkit.org/assets/js/R_syntax.js"></script> | ||
<script type="text/javascript" src="https://mzkit.org/assets/js/highlights.js"></script> | ||
<script type="text/javascript">r_highlights("clr_ts");</script> | ||
|
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</html> |
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vignettes/clr/BioNovoGene/BioDeep/Chemistry/SpectraSection.html
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<!DOCTYPE html> | ||
<html> | ||
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<head> | ||
<title>BioNovoGene.BioDeep.Chemistry.SpectraSection</title> | ||
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> | ||
<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes" /> | ||
<link rel="stylesheet" type="text/css" href="https://mzkit.org/assets/js/page.css"> | ||
</head> | ||
|
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<body> | ||
<div class="container"> | ||
|
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<table style="width: 100%;"> | ||
<tr> | ||
<td>SpectraSection {BioNovoGene.BioDeep.Chemistry}</td> | ||
<td style="text-align: right;">.NET clr documentation</td> | ||
</tr> | ||
</table> | ||
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<h2>SpectraSection</h2> | ||
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<h3>Description</h3> | ||
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<p>Union of the spectrum data and the metabolite annotation metadata</p> | ||
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<p>this data object used for union the metabolite annotation <a href="/vignettes/clr/BioNovoGene/BioDeep/Chemistry/MetaData.html">MetaData</a> and | ||
the spectrum data(<a href="/vignettes/clr/BioNovoGene/BioDeep/Chemistry/SpectraSection.html">SpectraSection</a>.<a href="/vignettes/clr/BioNovoGene/BioDeep/Chemistry/SpectraInfo.html">SpectraInfo</a>).</p> | ||
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<h3>Declare</h3> | ||
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<pre> | ||
<code id="clr_ts"> | ||
# namespace BioNovoGene.BioDeep.Chemistry | ||
export class SpectraSection extends <a href="/vignettes/clr/BioNovoGene/BioDeep/Chemistry/MetaLib/Models/MetaInfo.html">MetaInfo</a> { | ||
# should contains the necessary header data for @<code>M:BioNovoGene.BioDeep.Chemistry.SchemaMapper.FillData(System.Collections.Specialized.NameValueCollection)</code> | ||
Comment: <a href="/vignettes/clr/System/Collections/Specialized/NameValueCollection.html">NameValueCollection</a>; | ||
description: string; | ||
exact_mass: double; | ||
formula: string; | ||
GetSpectrumPeaks: <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Math/Spectra/PeakMs2.html">PeakMs2</a>; | ||
ID: string; | ||
IUPACName: string; | ||
libtype: <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Math/Ms1/PrecursorType/IonModes.html">IonModes</a>; | ||
# MoNA里面都主要是将注释的信息放在<a href="/vignettes/clr/BioNovoGene/BioDeep/Chemistry/SpectraSection.html">SpectraSection</a>.<a href="/vignettes/clr/System/Collections/Specialized/NameValueCollection.html">Comment</a>字段里面的。 | ||
# 物质的注释信息主要是放在这个结构体之中,这个属性是对<a href="/vignettes/clr/BioNovoGene/BioDeep/Chemistry/SpectraSection.html">SpectraSection</a>.<a href="/vignettes/clr/System/Collections/Specialized/NameValueCollection.html">Comment</a> | ||
# 属性的解析结果 | ||
MetaDB: <a href="/vignettes/clr/BioNovoGene/BioDeep/Chemistry/MetaData.html">MetaData</a>; | ||
MetaReader: <a href="/vignettes/clr/BioNovoGene/BioDeep/Chemistry/UnionReader.html">UnionReader</a>; | ||
ms_level: integer; | ||
name: string; | ||
# The reference spectrum data | ||
SpectraInfo: <a href="/vignettes/clr/BioNovoGene/BioDeep/Chemistry/SpectraInfo.html">SpectraInfo</a>; | ||
synonym: string; | ||
xref: <a href="/vignettes/clr/BioNovoGene/BioDeep/Chemistry/MetaLib/CrossReference/xref.html">xref</a>; | ||
} | ||
</code> | ||
</pre> | ||
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<h3>.NET clr type reference tree</h3> | ||
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<ol> | ||
<li>this class extends from <a href="/vignettes/clr/BioNovoGene/BioDeep/Chemistry/MetaLib/Models/MetaInfo.html">MetaInfo</a> class: <a href="/vignettes/clr/BioNovoGene/BioDeep/Chemistry/MetaLib/Models/MetaInfo.html">MetaInfo</a></li> | ||
<li>use by <i>property</i> member <code>Comment</code>: <a href="/vignettes/clr/System/Collections/Specialized/NameValueCollection.html">NameValueCollection</a></li> | ||
<li>use by <i>property</i> member <code>GetSpectrumPeaks</code>: <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Math/Spectra/PeakMs2.html">PeakMs2</a></li> | ||
<li>use by <i>property</i> member <code>libtype</code>: <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Math/Ms1/PrecursorType/IonModes.html">IonModes</a></li> | ||
<li>use by <i>property</i> member <code>MetaDB</code>: <a href="/vignettes/clr/BioNovoGene/BioDeep/Chemistry/MetaData.html">MetaData</a></li> | ||
<li>use by <i>property</i> member <code>MetaReader</code>: <a href="/vignettes/clr/BioNovoGene/BioDeep/Chemistry/UnionReader.html">UnionReader</a></li> | ||
<li>use by <i>property</i> member <code>SpectraInfo</code>: <a href="/vignettes/clr/BioNovoGene/BioDeep/Chemistry/SpectraInfo.html">SpectraInfo</a></li> | ||
<li>use by <i>property</i> member <code>xref</code>: <a href="/vignettes/clr/BioNovoGene/BioDeep/Chemistry/MetaLib/CrossReference/xref.html">xref</a></li> | ||
</ol> | ||
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<hr /> | ||
<div style="text-align: center;">[Package <em>{$package}</em> version {$version} <a | ||
href="../{$package}.html">Index</a>] | ||
</div> | ||
</div> | ||
</body> | ||
|
||
<script type="text/javascript" src="https://mzkit.org/assets/js/R_syntax.js"></script> | ||
<script type="text/javascript" src="https://mzkit.org/assets/js/highlights.js"></script> | ||
<script type="text/javascript">r_highlights("clr_ts");</script> | ||
|
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</html> |
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