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<!DOCTYPE html><html lang="zh-CN"> | ||
<head> | ||
<meta http-equiv="content-type" content="text/html; charset=UTF-8" /> | ||
<meta http-equiv="X-UA-Compatible" content="IE=Edge" /> | ||
<meta charset="utf-8" /> | ||
<meta name="viewport" content="width=device-width, minimum-scale=1.0, maximum-scale=1.0" /> | ||
<title>deconvolution</title> | ||
<meta name="author" content="[email protected]" /> | ||
<meta name="copyright" content="SMRUCC genomics Copyright (c) 2022" /> | ||
<meta name="keywords" content="R#; deconvolution; hpc" /> | ||
<meta name="generator" content="https://github.com/rsharp-lang" /> | ||
<meta name="theme-color" content="#333" /> | ||
<meta name="description" content="..." /> | ||
<meta class="foundation-data-attribute-namespace" /> | ||
<meta class="foundation-mq-xxlarge" /> | ||
<meta class="foundation-mq-xlarge" /> | ||
<meta class="foundation-mq-large" /> | ||
<meta class="foundation-mq-medium" /> | ||
<meta class="foundation-mq-small" /> | ||
<meta class="foundation-mq-topbar" /> | ||
<style> | ||
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.table-three-line { | ||
border-collapse:collapse; /* 关键属性:合并表格内外边框(其实表格边框有2px,外面1px,里面还有1px哦) */ | ||
border:solid #000000; /* 设置边框属性;样式(solid=实线)、颜色(#999=灰) */ | ||
border-width:2px 0 2px 0px; /* 设置边框状粗细:上 右 下 左 = 对应:1px 0 0 1px */ | ||
} | ||
.left-1{ | ||
border:solid #000000;border-width:1px 1px 2px 0px;padding:2px; | ||
font-weight:bolder; | ||
} | ||
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border:solid #000000;border-width:1px 0px 2px 1px;padding:2px; | ||
font-weight:bolder; | ||
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border:solid #000000;border-width:1px 1px 2px 1px;padding:2px; | ||
font-weight:bolder; | ||
} | ||
.left{ | ||
border:solid #000000;border-width:1px 1px 1px 0px;padding:2px; | ||
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border:solid #000000;border-width:1px 0px 1px 1px;padding:2px; | ||
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border:solid #000000;border-width:1px 1px 1px 1px;padding:2px; | ||
} | ||
table caption {font-size:14px;font-weight:bolder;} | ||
</style> | ||
</head> | ||
<body> | ||
<table width="100%" summary="page for {deconvolution}"> | ||
<tbody> | ||
<tr> | ||
<td>{deconvolution}</td> | ||
<td style="text-align: right;">R# Documentation</td> | ||
</tr> | ||
</tbody> | ||
</table> | ||
<h1>deconvolution</h1> | ||
<hr /> | ||
<p style=" font-size: 1.125em; line-height: .8em; margin-left: 0.5%; background-color: #fbfbfb; padding: 24px; "> | ||
<code> | ||
<span style="color: blue;">require</span>(<span style="color: black; font-weight: bold;">mzkit_hpc</span>); | ||
<br /><br /><span style="color: green;">{$desc_comments}</span><br /><span style="color: blue;">imports</span><span style="color: brown"> "deconvolution"</span><span style="color: blue;"> from</span><span style="color: brown"> "hpc"</span>; | ||
</code> | ||
</p> | ||
<p></p> | ||
<blockquote> | ||
<p style="font-style: italic; font-size: 0.9em;"> | ||
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</p> | ||
</blockquote> | ||
<div id="main-wrapper"> | ||
<table class="table-three-line" style="display: none"> | ||
<caption>.NET clr type export</caption> | ||
<tbody></tbody> | ||
</table> | ||
<br /> | ||
<br /> | ||
<table class="table-three-line"> | ||
<caption>.NET clr function exports</caption> | ||
<tbody><tr> | ||
<td id="peak_alignments"> | ||
<a href="./deconvolution/peak_alignments.html">peak_alignments</a> | ||
</td> | ||
<td><p>Make peak group alignments and export peaktable</p></td> | ||
</tr></tbody> | ||
</table> | ||
</div> | ||
<hr /> | ||
<div style="text-align: center;">[<a href="../index.html">Document Index</a>]</div> | ||
</body> | ||
</html> |
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vignettes/mzkit_hpc/hpc/deconvolution/peak_alignments.html
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<!DOCTYPE html> | ||
<html> | ||
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<head> | ||
<title>Make peak group alignments and export peaktable</title> | ||
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> | ||
<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes" /> | ||
<link rel="stylesheet" type="text/css" href="https://mzkit.org/assets/js/page.css"> | ||
</head> | ||
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<body> | ||
<div class="container"> | ||
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<table style="width: 100%;"> | ||
<tr> | ||
<td>peak_alignments {deconvolution}</td> | ||
<td style="text-align: right;">R Documentation</td> | ||
</tr> | ||
</table> | ||
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<h2>Make peak group alignments and export peaktable</h2> | ||
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<h3>Description</h3> | ||
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<h3>Usage</h3> | ||
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<div style="width: 100%; padding-left: 3%; color: black;"> | ||
<pre><code class='language-R' style="color: black; font-weight:normal;"><strong>peak_alignments</strong>(<i>peak.groups</i>, <i>features.mz</i>, | ||
<i>tolerance</i> = <span style='color: brown;'><strong>"da:0.005"</strong></span>, | ||
<i>peak.width</i> = <span style='color: brown;'><strong>"3,15"</strong></span>, | ||
<i>baseline</i> = <span style='color: green;'>0.65</span>, | ||
<i>joint</i> = <span style='color: blue !important;'>FALSE</span>, | ||
<i>dtw</i> = <span style='color: blue !important;'>FALSE</span>);</code></pre> | ||
</div> | ||
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<h3>Arguments</h3> | ||
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<table> | ||
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<dt>peak.groups</dt> | ||
<dd><p>[as <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Math/XICPool.html">XICPool</a>]</p></dd> | ||
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<dt>features.mz</dt> | ||
<dd><p>[as double]</p></dd> | ||
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</table> | ||
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<h3 style="display: none;">Details</h3> | ||
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<h3 style="display: block">Authors</h3> | ||
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hpc | ||
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<h3>Value</h3> | ||
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this function returns data object of type <i>any</i> kind.<h4>clr value class</h4><ul><li><i>any</i> kind</li></ul> | ||
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<h3 style="display: none;">Examples</h3> | ||
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<hr /> | ||
<div style="text-align: center;">[Package <em>deconvolution</em> version 1.0.0.0 <a | ||
href="../deconvolution.html">Index</a>] | ||
</div> | ||
</div> | ||
</body> | ||
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<script type="text/javascript" src="https://mzkit.org/assets/js/R_syntax.js"></script> | ||
<script type="text/javascript" src="https://mzkit.org/assets/js/highlights.js"></script> | ||
<script type="text/javascript">r_highlights("example_r");</script> | ||
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</html> |
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Author: xieguigang | ||
Maintainer: xieguigang <[email protected]> | ||
Description: Build high performance computing mzkit algorithm library | ||
based on Darwinism HPC runtime. | ||
based on Darwinism HPC runtime. An engineering practice of processing | ||
ultra massive lc-ms mass spectrometry rawdata, ms-imaging rawdata | ||
and single-cells metabolomics rawdata. | ||
License: MIT | ||
Encoding: UTF-8 | ||
LazyData: true | ||
</pre> | ||
<br /> | ||
<a href="./keywords.html">View package by keywords.</a> | ||
<h2>R Package Symbols</h2> | ||
<ul> | ||
<li><a href="./R/docs/.onLoad.html">.onLoad</a></li> | ||
</ul> | ||
<h2>Library: hpc.dll</h2> | ||
<ul> | ||
<li><a href="./hpc/deconvolution.html">deconvolution</a></li> | ||
<li><a href="./hpc/MsImaging.html">MsImaging</a></li> | ||
</ul> |
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<h2>lc-ms</h2> | ||
<p><a href="./hpc/deconvolution/peak_alignments.html">peak_alignments</a></p> | ||
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<h2>single cells</h2> | ||
<p><a href="./hpc/MsImaging/SCMs_ionStat_parallel.html">SCMs_ionStat_parallel</a></p> | ||
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<h2>parallel</h2> | ||
<p><a href="./hpc/MsImaging/SCMs_ionStat_parallel.html">SCMs_ionStat_parallel</a>, <a href="./hpc/MsImaging/MSI_ionStat_parallel.html">MSI_ionStat_parallel</a></p> | ||
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<h2>features</h2> | ||
<p><a href="./hpc/MsImaging/SCMs_ionStat_parallel.html">SCMs_ionStat_parallel</a>, <a href="./hpc/MsImaging/MSI_ionStat_parallel.html">MSI_ionStat_parallel</a></p> | ||
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<h2>spatial</h2> | ||
<p><a href="./hpc/MsImaging/MSI_ionStat_parallel.html">MSI_ionStat_parallel</a></p> | ||
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