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Hierarchical Causal Models #236

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Hierarchical Causal Models #236

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Commits on Sep 5, 2024

  1. functions for creating and querying HCMs with pygraphviz

    @adamrupe
    adamrupe committed Sep 5, 2024
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  2. functionality to collapse phygraphviz HCMs to nxmixedgraphs

    @adamrupe
    adamrupe committed Sep 5, 2024
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  3. added __all__

    @adamrupe
    adamrupe committed Sep 5, 2024
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  4. added test_hierarchical

    @adamrupe
    adamrupe committed Sep 5, 2024
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Commits on Sep 6, 2024

  1. pygraphviz dep and lint exception for hierarchical in pyproject

    @adamrupe
    adamrupe committed Sep 6, 2024
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  2. auto lint hierarchical

    @adamrupe
    adamrupe committed Sep 6, 2024
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  3. auto lint test_hierarchical

    @adamrupe
    adamrupe committed Sep 6, 2024
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  4. added docstrings to hierarchical.py

    @adamrupe
    adamrupe committed Sep 6, 2024
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  5. added docstrings to test_hierarchical.py

    @adamrupe
    adamrupe committed Sep 6, 2024
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  6. more ignores in pyproject.toml

    @adamrupe
    adamrupe committed Sep 6, 2024
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  7. imperative docstrings

    @adamrupe
    adamrupe committed Sep 6, 2024
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  8. cleaned whitespace

    @adamrupe
    adamrupe committed Sep 6, 2024
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  9. lint HCM_from_lists

    @adamrupe
    adamrupe committed Sep 6, 2024
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  10. more linting

    @adamrupe
    adamrupe committed Sep 6, 2024
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  11. added typing to hierarchical.py

    @adamrupe
    adamrupe committed Sep 6, 2024
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  12. added typing to test_hierarchical.py

    @adamrupe
    adamrupe committed Sep 6, 2024
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Commits on Sep 11, 2024

  1. HCM notebook with Fig 2 up to collapsed models

    @adamrupe
    adamrupe committed Sep 11, 2024
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  2. lint fixes

    @adamrupe
    adamrupe committed Sep 11, 2024
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  3. docstring lint

    @adamrupe
    adamrupe committed Sep 11, 2024
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Commits on Sep 12, 2024

  1. Merge branch 'main' into HCM-fig2

    @cthoyt
    cthoyt committed Sep 12, 2024
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  2. test fixtures for Fig 2 augmented models

    @adamrupe
    adamrupe committed Sep 12, 2024
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  3. added augment_collapsed_model function that implements Algorithm 2

    @adamrupe
    adamrupe committed Sep 12, 2024
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  4. tox formatting

    @adamrupe
    adamrupe committed Sep 12, 2024
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  5. tests for augmentation and formatting

    @adamrupe
    adamrupe committed Sep 12, 2024
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  6. added augmented models to notebook

    @adamrupe
    adamrupe committed Sep 12, 2024
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  7. add marginalize function implementing Algorithm 3

    @adamrupe
    adamrupe committed Sep 12, 2024
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  8. Instrument test for algorithm 3

    @adamrupe
    adamrupe committed Sep 12, 2024
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Commits on Sep 13, 2024

  1. Merge branch 'main' into HCM-fig2

    @cthoyt
    cthoyt authored Sep 13, 2024
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  2. Merge branch 'main' into HCM-fig2

    @cthoyt
    cthoyt committed Sep 13, 2024
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  3. Clean up literals

    @cthoyt
    cthoyt committed Sep 13, 2024
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  4. update collapse_HCM to preserve unit-level edges

    @adamrupe
    adamrupe committed Sep 13, 2024
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  5. Merge remote-tracking branch 'refs/remotes/origin/HCM-fig2' into HCM-… 

    …fig2
    @adamrupe
    adamrupe committed Sep 13, 2024
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  6. update augment and marginalize functions to return new objects instea… 

    …d of mutate input
    @adamrupe
    adamrupe committed Sep 13, 2024
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Commits on Sep 17, 2024

  1. added copy_HCM

    @adamrupe
    adamrupe committed Sep 17, 2024
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  2. Fig 2 fixture tests for copy_HCM

    @adamrupe
    adamrupe committed Sep 17, 2024
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  3. added convert_to_HCGM

    @adamrupe
    adamrupe committed Sep 17, 2024
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Commits on Sep 18, 2024

  1. tests for convert to HCGM

    @adamrupe
    adamrupe committed Sep 18, 2024
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  2. minor lint

    @adamrupe
    adamrupe committed Sep 18, 2024
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  3. update HCGM styles for consistency with observed vars

    @adamrupe
    adamrupe committed Sep 18, 2024
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  4. update convert_to_HCGM to handle unobserved Q vars

    @adamrupe
    adamrupe committed Sep 18, 2024
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  5. add functions to parse semiMarkov edges from HCMs with latent variables

    @adamrupe
    adamrupe committed Sep 18, 2024
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  6. updated collapse_HCM with intermediate convert_to_HCGM; follows paper… 

    … pseudocode much closer and has option to return intermediate HCGM
    @adamrupe
    adamrupe committed Sep 18, 2024
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Commits on Sep 19, 2024

  1. lint and fix bug on direct_unit_descendents

    @adamrupe
    adamrupe committed Sep 19, 2024
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Commits on Sep 25, 2024

  1. bug fix augment_collapsed_model

    @adamrupe
    adamrupe committed Sep 25, 2024
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  2. added sorting to create_Qvar

    @adamrupe
    adamrupe committed Sep 25, 2024
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  3. update test with sorted Qvar

    @adamrupe
    adamrupe committed Sep 25, 2024
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Commits on Oct 1, 2024

  1. Merge branch 'main' into HCM-fig2

    @cthoyt
    cthoyt committed Oct 1, 2024
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  2. Update hierarchical.py

    @cthoyt
    cthoyt committed Oct 1, 2024
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  3. Add type checking for tests

    @cthoyt
    cthoyt committed Oct 1, 2024
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  4. Update test_hierarchical.py

    @cthoyt
    cthoyt committed Oct 1, 2024
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Commits on Oct 2, 2024

  1. Update tox.ini

    @cthoyt
    cthoyt committed Oct 2, 2024
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