This is a supplementary code (in Python 3.5) for the paper R. Luke and Y. Malitsky “Block-coordinate primal-dual method for the nonsmooth minimization over linear constraints”
There are 3 problems: basis pursuit, noisy basis pursuit and robust principal component analysis; for each problem there is an independent folder.
The folder contains codes for the primal-dual and coordinate primal-dual algorithms. In order to reproduce the results obtained in the paper, one needs to run basis_pursuit.py. The results will be written in the folder results in org-format. (If you use Emacs, it is easy to transform them into html files). The original html files are included.
Since the results for these problem are mostly plots, in order to see them you have to run Noisy Basis Pursuit.ipynb in the Jupyter notebook.
There is only one file robust_pca.py that you have to run in order to see the results. The results will be written to the folder results in org-format. The original html files are also included.
The most important thing that you need for running code for the first two problems is Numba library. It produces an optimized machine code using the LLVM compiler. It might be somehow complicated to install it for your system. We recommend to use it either using
Anaconda distribution or NixOS packages for python. The reason to use Numba for the coordinate versions of the primal-dual algorithm is obvious: one epoch of the standard primal-dual algorithm (which is in fact just one iteration) is based only on the fast numpy (already precompiled) functions. However, one epoch of the coordinate PDA will need to use for loop which is of course much slower. Hence, to have a fair comparison, we need the most expensive operations for both methods to have pre-compiled.
If you encounter problems while installing Numba, you still can use this code. You just need to comment the decorators of Numba in all files. It is the following line @jit(nopython=True, nogil=True, cache=True). But of course now the results relating cpu time will be different.
Another maybe non-standard library is tabulate. We use it only for formatting the results in org-mode form. This one is easy to install.