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Merge pull request #108 from theoliver7/master
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updated links in fetch_dataset and fixed SSL purpose
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@ysig
ysig authored Oct 17, 2024
2 parents 523d642 + e9d088a commit ed1cec8
Showing 1 changed file with 54 additions and 107 deletions.
161 changes: 54 additions & 107 deletions grakel/datasets/base.py
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Original file line number Diff line number Diff line change
Expand Up @@ -29,164 +29,111 @@

dataset_metadata = {
"AIDS": {"nl": True, "el": True, "na": True, "ea": False,
"link": "http://ls11-www.cs.uni-dortmund.de/people/" +
"morris/graphkerneldatasets/AIDS.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/AIDS.zip"},
"BZR": {"nl": True, "el": False, "na": True, "ea": False,
"link": "http://ls11-www.cs.uni-dortmund.de/people/" +
"morris/graphkerneldatasets/BZR.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/BZR.zip"},
"BZR_MD": {"nl": True, "el": True, "na": False, "ea": True,
"link": "http://ls11-www.cs.uni-dortmund.de/people/" +
"morris/graphkerneldatasets/BZR_MD.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/BZR_MD.zip"},
"COIL-DEL": {"nl": False, "el": True, "na": True, "ea": False,
"link": "http://ls11-www.cs.uni-dortmund.de/people/morris/" +
"graphkerneldatasets/COIL-DEL.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/COIL-DEL.zip"},
"COIL-RAG": {"nl": False, "el": False, "na": True, "ea": True,
"link": "http://ls11-www.cs.uni-dortmund.de/people/morris/" +
"graphkerneldatasets/COIL-RAG.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/COIL-RAG.zip"},
"COLLAB": {"nl": False, "el": False, "na": False, "ea": False,
"link": "http://ls11-www.cs.uni-dortmund.de/people/morris/" +
"graphkerneldatasets/COLLAB.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/COLLAB.zip"},
"COX2": {"nl": True, "el": False, "na": True, "ea": False,
"link": "http://ls11-www.cs.uni-dortmund.de/people/morris/" +
"graphkerneldatasets/COX2.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/COX2.zip"},
"COX2_MD": {"nl": True, "el": True, "na": False, "ea": True,
"link": "http://ls11-www.cs.uni-dortmund.de/people/morris/" +
"graphkerneldatasets/COX2_MD.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/COX2_MD.zip"},
"DHFR": {"nl": True, "el": False, "na": True, "ea": False,
"link": "http://ls11-www.cs.uni-dortmund.de/people/morris/" +
"graphkerneldatasets/DHFR.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/DHFR.zip"},
"DHFR_MD": {"nl": True, "el": True, "na": False, "ea": True,
"link": "http://ls11-www.cs.uni-dortmund.de/people/morris/" +
"graphkerneldatasets/DHFR_MD.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/DHFR_MD.zip"},
"ER_MD": {"nl": True, "el": True, "na": False, "ea": True,
"link": "http://ls11-www.cs.uni-dortmund.de/people/morris/" +
"graphkerneldatasets/ER_MD.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/ER_MD.zip"},
"DD": {"nl": True, "el": False, "na": False, "ea": False,
"link": "http://ls11-www.cs.uni-dortmund.de/people/morris/" +
"graphkerneldatasets/DD.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/DD.zip"},
"ENZYMES": {"nl": True, "el": False, "na": True, "ea": False,
"link": "http://ls11-www.cs.uni-dortmund.de/people/morris/" +
"graphkerneldatasets/ENZYMES.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/ENZYMES.zip"},
"Cuneiform": {"nl": True, "el": True, "na": True, "ea": True,
"link": "http://ls11-www.cs.uni-dortmund.de/people/morris/"
"graphkerneldatasets/Cuneiform.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/Cuneiform.zip"},
"FINGERPRINT": {"nl": False, "el": False, "na": True, "ea": True,
"link": "http://ls11-www.cs.uni-dortmund.de/people/" +
"morris/graphkerneldatasets/Fingerprint.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/Fingerprint.zip"},
"FIRSTMM_DB": {"nl": True, "el": False, "na": True, "ea": True,
"link": "http://ls11-www.cs.uni-dortmund.de/people/" +
"morris/graphkerneldatasets/FIRSTMM_DB.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/graphkerneldatasets/FIRSTMM_DB.zip"},
"FRANKENSTEIN": {"nl": False, "el": False, "na": True, "ea": False,
"link": "http://ls11-www.cs.uni-dortmund.de/people/mor" +
"ris/graphkerneldatasets/FRANKENSTEIN.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/FRANKENSTEIN.zip"},
"IMDB-BINARY": {"nl": False, "el": False, "na": False, "ea": False,
"link": "http://ls11-www.cs.uni-dortmund.de/people/mor" +
"ris/graphkerneldatasets/IMDB-BINARY.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/IMDB-BINARY.zip"},
"IMDB-MULTI": {"nl": False, "el": False, "na": False, "ea": False,
"link": "http://ls11-www.cs.uni-dortmund.de/people/" +
"morris/graphkerneldatasets/IMDB-MULTI.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/graphkerneldatasets/IMDB-MULTI.zip"},
"Letter-high": {"nl": False, "el": False, "na": True, "ea": False,
"link": "http://ls11-www.cs.uni-dortmund.de/people/mor" +
"ris/graphkerneldatasets/Letter-high.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/Letter-high.zip"},
"Letter-low": {"nl": False, "el": False, "na": True, "ea": False,
"link": "http://ls11-www.cs.uni-dortmund.de/people/mor" +
"ris/graphkerneldatasets/Letter-low.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/Letter-low.zip"},
"Letter-med": {"nl": False, "el": False, "na": True, "ea": False,
"link": "http://ls11-www.cs.uni-dortmund.de/people/mor" +
"ris/graphkerneldatasets/Letter-med.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/Letter-med.zip"},
"Mutagenicity": {"nl": True, "el": True, "na": False, "ea": False,
"link": "http://ls11-www.cs.uni-dortmund.de/peo" +
"ple/morris/graphkerneldatasets/Mutagenicity.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/Mutagenicity.zip"},
"MSRC_9": {"nl": True, "el": False, "na": False, "ea": False,
"link": "http://ls11-www.cs.uni-dortmund.de/people/morris/" +
"graphkerneldatasets/MSRC_9.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/MSRC_9.zip"},
"MSRC_21": {"nl": True, "el": False, "na": False, "ea": False,
"link": "http://ls11-www.cs.uni-dortmund.de/people/mor" +
"ris/graphkerneldatasets/MSRC_21.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/MSRC_21.zip"},
"MSRC_21C": {"nl": True, "el": False, "na": False, "ea": False,
"link": "http://ls11-www.cs.uni-dortmund.de/people/mor" +
"ris/graphkerneldatasets/MSRC_21C.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/MSRC_21C.zip"},
"MUTAG": {"nl": True, "el": True, "na": False, "ea": False,
"link": "http://ls11-www.cs.uni-dortmund.de/people/mor" +
"ris/graphkerneldatasets/MUTAG.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/MUTAG.zip"},
"NCI1": {"nl": True, "el": False, "na": False, "ea": False,
"link": "http://ls11-www.cs.uni-dortmund.de/people/mor" +
"ris/graphkerneldatasets/NCI1.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/NCI1.zip"},
"NCI109": {"nl": True, "el": False, "na": False, "ea": False,
"link": "http://ls11-www.cs.uni-dortmund.de/people/mor" +
"ris/graphkerneldatasets/NCI109.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/NCI109.zip"},
"PTC_FM": {"nl": True, "el": True, "na": False, "ea": False,
"link": "http://ls11-www.cs.uni-dortmund.de/people/mor" +
"ris/graphkerneldatasets/PTC_FM.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/PTC_FM.zip"},
"PTC_FR": {"nl": True, "el": True, "na": False, "ea": False,
"link": "http://ls11-www.cs.uni-dortmund.de/people/mor" +
"ris/graphkerneldatasets/PTC_FR.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/PTC_FR.zip"},
"PTC_MM": {"nl": True, "el": True, "na": False, "ea": False,
"link": "http://ls11-www.cs.uni-dortmund.de/people/mor" +
"ris/graphkerneldatasets/PTC_MM.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/PTC_MM.zip"},
"PTC_MR": {"nl": True, "el": True, "na": False, "ea": False,
"link": "http://ls11-www.cs.uni-dortmund.de/people/mor" +
"ris/graphkerneldatasets/PTC_MR.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/PTC_MR.zip"},
"PROTEINS": {"nl": True, "el": False, "na": True, "ea": False,
"link": "http://ls11-www.cs.uni-dortmund.de/people/mor" +
"ris/graphkerneldatasets/PROTEINS.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/PROTEINS.zip"},
"PROTEINS_full": {"nl": True, "el": False, "na": True, "ea": False,
"link": "http://ls11-www.cs.uni-dortmund.de/people" +
"/morris/graphkerneldatasets/PROTEINS_full.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/PROTEINS_full.zip"},
"REDDIT-BINARY": {"nl": False, "el": False, "na": False, "ea": False,
"link": "http://ls11-www.cs.uni-dortmund.de/people" +
"/morris/graphkerneldatasets/REDDIT-BINARY.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/REDDIT-BINARY.zip"},
"REDDIT-MULTI-5K": {"nl": False, "el": False, "na": False, "ea": False,
"link": "http://ls11-www.cs.uni-dortmund.de/people/" +
"morris/graphkerneldatasets/REDDIT-MULTI-5K.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/REDDIT-MULTI-5K.zip"},
"REDDIT-MULTI-12K": {"nl": False, "el": False, "na": False, "ea": False,
"link": "http://ls11-www.cs.uni-dortmund.de/peop" +
"le/morris/graphkerneldatasets/REDDIT-MULTI-12K.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/REDDIT-MULTI-12K.zip"},
"SYNTHETIC": {"nl": False, "el": False, "na": True, "ea": False,
"link": "http://ls11-www.cs.uni-dortmund.de/people" +
"/morris/graphkerneldatasets/SYNTHETIC.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/SYNTHETIC.zip"},
"SYNTHETICnew": {"nl": False, "el": False, "na": True, "ea": False,
"link": "http://ls11-www.cs.uni-dortmund.de/people/" +
"morris/graphkerneldatasets/SYNTHETICnew.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/SYNTHETICnew.zip"},
"Synthie": {"nl": False, "el": False, "na": True, "ea": False,
"link": "http://ls11-www.cs.uni-dortmund.de/people/" +
"morris/graphkerneldatasets/Synthie.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/Synthie.zip"},
"Tox21_AHR": {"nl": True, "el": True, "na": False, "ea": False,
"link": "http://ls11-www.cs.uni-dortmund.de/people/" +
"morris/graphkerneldatasets/Tox21_AHR.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/Tox21_AHR.zip"},
"Tox21_AR": {"nl": True, "el": True, "na": False, "ea": False,
"link": "http://ls11-www.cs.uni-dortmund.de/people/morris/" +
"graphkerneldatasets/COX2_MD.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/Tox21_AR.zip"},
"Tox21_AR-LBD": {"nl": True, "el": True, "na": False, "ea": False,
"link": "http://ls11-www.cs.uni-dortmund.de/people/" +
"morris/graphkerneldatasets/Tox21_AR-LBD.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/Tox21_AR-LBD.zip"},
"Tox21_ARE": {"nl": True, "el": True, "na": False, "ea": False,
"link": "http://ls11-www.cs.uni-dortmund.de/people/" +
"morris/graphkerneldatasets/Tox21_ARE.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/Tox21_ARE.zip"},
"Tox21_aromatase": {"nl": True, "el": True, "na": False, "ea": False,
"link": "http://ls11-www.cs.uni-dortmund.de/people/" +
"morris/graphkerneldatasets/Tox21_aromatase.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/Tox21_aromatase.zip"},
"Tox21_ATAD5": {"nl": True, "el": True, "na": False, "ea": False,
"link": "http://ls11-www.cs.uni-dortmund.de/people/" +
"morris/graphkerneldatasets/Tox21_ATAD5.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/Tox21_ATAD5.zip"},
"Tox21_ER": {"nl": True, "el": True, "na": False, "ea": False,
"link": "http://ls11-www.cs.uni-dortmund.de/people/" +
"morris/graphkerneldatasets/Tox21_ER.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/Tox21_ER.zip"},
"Tox21_ER_LBD": {"nl": True, "el": True, "na": False, "ea": False,
"link": "http://ls11-www.cs.uni-dortmund.de/people/" +
"morris/graphkerneldatasets/Tox21_ER_LBD.zipp"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/Tox21_ER_LBD.zipp"},
"Tox21_HSE": {"nl": True, "el": True, "na": False, "ea": False,
"link": "http://ls11-www.cs.uni-dortmund.de/people/" +
"morris/graphkerneldatasets/Tox21_HSE.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/Tox21_HSE.zip"},
"Tox21_MMP": {"nl": True, "el": True, "na": False, "ea": False,
"link": "http://ls11-www.cs.uni-dortmund.de/people/" +
"morris/graphkerneldatasets/Tox21_MMP.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/Tox21_MMP.zip"},
"Tox21_p53": {"nl": True, "el": True, "na": False, "ea": False,
"link": "http://ls11-www.cs.uni-dortmund.de/people/" +
"morris/graphkerneldatasets/Tox21_p53.zip"},
"link": "https://www.chrsmrrs.com/graphkerneldatasets/Tox21_p53.zip"},
"Tox21_PPAR-gamma": {"nl": True, "el": True, "na": False, "ea": False,
"link": "http://ls11-www.cs.uni-dortmund.de/peop" +
"le/morris/graphkerneldatasets/Tox21_PPAR-gamma.zip"}
"link": "https://www.chrsmrrs.com/graphkerneldatasets/ox21_PPAR-gamma.zip"}
}

symmetric_dataset = False
Expand Down Expand Up @@ -366,7 +313,7 @@ def _download_zip(url, output_name):
None.
"""
ctx = ssl.create_default_context(ssl.Purpose.CLIENT_AUTH)
ctx = ssl.create_default_context(ssl.Purpose.SERVER_AUTH)
filename = output_name + ".zip"
try:
data_url = urlopen(url, context=ctx)
Expand Down

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