Discussions

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  How do I get a Genotype from a Sample?

  vcf

  afontenot asked Sep 9, 2024 in Q&A · Answered

  

  

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  How to get tags

  bam sam

  Liripo asked Aug 28, 2024 in Q&A · Unanswered

  

  

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  🙏

  Create an async SAM reader from stdin or file

  mbhall88 asked Jul 19, 2024 in Q&A · Answered

  

  

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  Best way to index a Box<dyn noodles::noodles_sam::alignment::record::Sequence>

  sam

  snalty asked Apr 22, 2024 in Q&A · Answered

  

  

  

  

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  Performance question

  bam bgzf

  anderspitman asked Jul 11, 2024 in Q&A · Answered

  

  

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  Help request: using the noodles async FASTQ writer with async compression without corrupting the output

  fastq

  nrminor asked Jul 3, 2024 in Q&A · Unanswered

  

  

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  🙌

  Performance comparison

  bgzf fasta

  andypohl started Jun 21, 2024 in Show and tell

  

  

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  Could you add a feature to enable "zlib-ng" of flate2?

  Crispy13 asked May 16, 2024 in Q&A · Answered

  

  

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  Could I get RecordBuf instead of Record from Query?

  Crispy13 asked May 15, 2024 in Q&A · Answered

  

  

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  📣

  noodles 0.68.0

  vcf bcf

  zaeleus announced Apr 4, 2024 in Announcements

  

  

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  Use of LazyRecord with queried IndexedReader (VCF), is it possible?

  vcf

  davidmasp asked Feb 13, 2024 in Q&A · Answered

  

  

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  📣

  noodles 0.61.0

  bam cram sam

  zaeleus announced Jan 25, 2024 in Announcements

  

  

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  Efficient intersection of BED and VCF

  vcf bed

  apraga asked Mar 10, 2024 in Q&A · Unanswered

  

  

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  How to update an existing tag in a BAM record?

  bam

  ghuls asked Mar 6, 2024 in Q&A · Answered

  

  

  

  

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  Using the CRAM readers, is there a way to read only blocks from specific data series

  cram

  markjschreiber asked Feb 29, 2024 in Q&A · Answered

  

  

  

  

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  Async version of vcf::reader::Builder?

  vcf

  holtgrewe asked Oct 23, 2023 in Q&A · Answered

  

  

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  vcf::AsyncWriter::into_inner() missing?

  vcf

  holtgrewe asked Oct 23, 2023 in Q&A · Answered

  

  

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  💬

  passing around a VCF query

  vcf

  brentp started Oct 23, 2023 in General

  

  

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  Create tabix index from scratch

  tabix vcf

  holtgrewe asked Oct 19, 2023 in Q&A · Answered

  

  

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  💬

  vs. rust htslib

  Kentalot started Oct 2, 2023 in General

  

  

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  similar names due to features? (and features of optional features)

  brentp started Aug 21, 2023 in General · Closed

  

  

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  Using noodles_tabix for reading tbi-indexed tsv.bgz files

  tabix

  holtgrewe asked May 11, 2023 in Q&A · Answered

  

  

  

  

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  noodles-bam lazy_records question

  bam

  andypexai asked Jul 4, 2023 in Q&A · Answered

  

  

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  refget: Get metadata alone, without sequence

  refget

  juliangehring asked Jun 28, 2023 in Q&A · Answered

  

  

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