fix: get source and stats from both mates

zavolanlab · Jun 1, 2022 · 295fba7 · 295fba7
1 parent b1b4e54
commit 295fba7
Show file tree

Hide file tree

Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/htsinfer/get_library_source.py b/htsinfer/get_library_source.py
@@ -96,7 +96,7 @@ def evaluate(self) -> ResultsSource:
         )
         if self.paths[1] is not None:
             source.file_2 = self.get_source(
-                fastq=self.paths[0],
+                fastq=self.paths[1],
                 index=index,
             )
         return source

diff --git a/htsinfer/get_library_stats.py b/htsinfer/get_library_stats.py
@@ -57,7 +57,7 @@ def evaluate(self) -> ResultsStats:
         LOGGER.info(f"Obtaining statistics for file: {self.paths[0]}")
         if self.paths[1] is not None:
             stats.file_2.read_length.min, stats.file_2.read_length.max = (
-                self.fastq_get_min_max_read_length(fastq=self.paths[0])
+                self.fastq_get_min_max_read_length(fastq=self.paths[1])
             )
 
         return stats