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@zellerlab

Zeller Lab

Projects Relating to the Zeller Team's Research of Host-Microbiota Interactions

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  1. GECCO GECCO Public

    GEne Cluster prediction with COnditional random fields.

    Python 63 7

  2. siamcat siamcat Public

    R package for Statistical Inference of Associations between Microbial Communities And host phenoType

    R 52 16

  3. crc_meta crc_meta Public

    Code and analysis results for the CRC shotgun meta-analysis

    R 38 33

  4. stag stag Public

    A hierarchical taxonomic classifier for metagenomic sequences

    Python 8 2

  5. cayman cayman Public

    Python 8 4

  6. siamcat_paper siamcat_paper Public

    Analysis scripts and results presented in the SIAMCAT paper

    R 4 3

Repositories

Showing 10 of 22 repositories
  • cayman Public
    zellerlab/cayman’s past year of commit activity
    Python 8 MIT 4 2 1 Updated Dec 22, 2024
  • ZellerLab.github.io Public Forked from NBCLab/NBCLab.github.io

    Website for the Zeller Lab

    zellerlab/ZellerLab.github.io’s past year of commit activity
    HTML 0 35 4 0 Updated Dec 19, 2024
  • stag Public

    A hierarchical taxonomic classifier for metagenomic sequences

    zellerlab/stag’s past year of commit activity
    Python 8 2 11 1 Updated Nov 30, 2024
  • gut-microbial-metabolism-of-immunosuppressants Public
    zellerlab/gut-microbial-metabolism-of-immunosuppressants’s past year of commit activity
    R 1 GPL-3.0 0 0 0 Updated Nov 27, 2024
  • nevermore Public Forked from cschu/nevermore

    Zeller-group fork of Nevermore

    zellerlab/nevermore’s past year of commit activity
    Nextflow 0 MIT 1 1 0 Updated Nov 8, 2024
  • cayman_paper Public
    zellerlab/cayman_paper’s past year of commit activity
    R 0 0 0 0 Updated Sep 27, 2024
  • SIMBA Public

    R package for the simulation of metagenomic samples

    zellerlab/SIMBA’s past year of commit activity
    R 2 0 2 0 Updated Sep 20, 2024
  • An-Atlas-of-the-Liver-Cancer-Microbiome Public

    An Atlas of the Liver Cancer Microbiome

    zellerlab/An-Atlas-of-the-Liver-Cancer-Microbiome’s past year of commit activity
    R 1 GPL-3.0 0 0 0 Updated Sep 4, 2024
  • BAMBI Public

    Benchmarking Analysis of MicroBiome Inference methods

    zellerlab/BAMBI’s past year of commit activity
    R 2 0 0 0 Updated Aug 23, 2024
  • Buchinger_Long_Term_Fasting Public
    zellerlab/Buchinger_Long_Term_Fasting’s past year of commit activity
    0 CC0-1.0 0 0 0 Updated Aug 15, 2024
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