Singularity.v0.10.1

Bootstrap: docker
From: ubuntu:20.04
IncludeCmd: yes

%labels
  MAINTAINER cschu (cschu1981@gmail.com)
  VERSION v0.10.1

%environment
export LC_ALL=C

%post
  apt-get update
  apt-get install -y apt-transport-https apt-utils software-properties-common
  apt-get install -y add-apt-key
  export DEBIAN_FRONTEND=noninteractive
  ln -fs /usr/share/zoneinfo/America/New_York /etc/localtime
  apt-get install -y tzdata
  dpkg-reconfigure --frontend noninteractive tzdata

  apt-get install -y wget python3-pip git gawk bwa


  mkdir -p /opt/software && \
  cd /opt/software && \
  git clone https://github.com/zellerlab/cayman.git && \
  cd cayman && \
  pip install .