Song et al. (2023) Landscape Ecology

Publication

Song, Y., Munch, S.B., & Zhu, K. (2023), Prediction-based approach for quantifying phenological mismatch across landscapes under climate change. Landscape Ecology. https://doi.org/10.1007/s10980-023-01595-0

User guide

• Empirical studies: Estimating phenological mismatch on large spatial scales with empirical data

  • Case study 1: Advancement in flowering matches or outpaces spring warming in eastern US
    Run script source("empirical/herbarium/code.R")

  • Case study 2: Advancement in bird breeding slightly outpaces warming trends in most species in Finland
    Run script source("empirical/bird/code.R")

• Simulation experiments: Recovering phenological mismatch with simulated continuous phenology data
  Run script source("simulations/code/workflow.R")

Session info

─ Session info ───────────────────────────────────────────────────────
 setting  value
 version  R version 4.2.0 (2022-04-22)
 os       Red Hat Enterprise Linux 8.4 (Ootpa)
 system   x86_64, linux-gnu
 ui       RStudio
 language (EN)
 collate  en_US.UTF-8
 ctype    en_US.UTF-8
 tz       America/Detroit
 date     2023-01-23
 rstudio  2022.07.2+576 Spotted Wakerobin (desktop)
 pandoc   2.0.6 @ /usr/bin/pandoc

─ Packages ───────────────────────────────────────────────────────
 package     * version date (UTC) lib source
 assertthat    0.2.1   2019-03-21 [3] CRAN (R 4.2.0)
 cli           3.4.1   2022-09-23 [1] CRAN (R 4.2.0)
 clipr         0.8.0   2022-02-22 [3] CRAN (R 4.2.0)
 colorspace    2.0-3   2022-02-21 [3] CRAN (R 4.2.0)
 DBI           1.1.3   2022-06-18 [2] CRAN (R 4.2.0)
 dplyr         1.0.9   2022-04-28 [3] CRAN (R 4.2.0)
 fansi         1.0.3   2022-03-24 [3] CRAN (R 4.2.0)
 generics      0.1.2   2022-01-31 [3] CRAN (R 4.2.0)
 ggplot2       3.4.0   2022-11-04 [1] CRAN (R 4.2.0)
 glue          1.6.2   2022-02-24 [3] CRAN (R 4.2.0)
 gtable        0.3.0   2019-03-25 [3] CRAN (R 4.2.0)
 lifecycle     1.0.3   2022-10-07 [1] CRAN (R 4.2.0)
 magrittr      2.0.3   2022-03-30 [3] CRAN (R 4.2.0)
 munsell       0.5.0   2018-06-12 [3] CRAN (R 4.2.0)
 pillar        1.8.1   2022-08-19 [1] CRAN (R 4.2.0)
 pkgconfig     2.0.3   2019-09-22 [3] CRAN (R 4.2.0)
 purrr         0.3.4   2020-04-17 [3] CRAN (R 4.2.0)
 R6            2.5.1   2021-08-19 [3] CRAN (R 4.2.0)
 rlang         1.0.6   2022-09-24 [1] CRAN (R 4.2.0)
 rstudioapi    0.13    2020-11-12 [3] CRAN (R 4.2.0)
 scales        1.2.0   2022-04-13 [3] CRAN (R 4.2.0)
 sessioninfo   1.2.2   2021-12-06 [1] CRAN (R 4.2.0)
 tibble        3.1.8   2022-07-22 [1] CRAN (R 4.2.0)
 tidyselect    1.1.2   2022-02-21 [3] CRAN (R 4.2.0)
 utf8          1.2.2   2021-07-24 [3] CRAN (R 4.2.0)
 vctrs         0.5.1   2022-11-16 [1] CRAN (R 4.2.0)