Updated everything to CDK 2.8; performance test jar now also runs wit…

…hout the CDK jar;
zielesny · Sep 22, 2022 · af405f7 · af405f7
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diff --git a/Basic/Basic usage instructions.txt b/Basic/Basic usage instructions.txt
@@ -7,7 +7,7 @@ Basic usage instructions with your Java IDE of choice and Java 1.8 (or higher)
    alternative you may directly add jar libraries "junit-4.12.jar" and 
    "hamcrest-core-1.3.jar" - located in super directory "JUnit 4" - for unit 
    testing).
-2. Add "cdk-2.7.1.jar" library - located in super directory "CDK" - to the Java 
+2. Add "cdk-2.8.jar" library - located in super directory "CDK" - to the Java 
    project (if necessary)
 3. Create package "org.openscience.cdk.tools" (if necessary) and import file 
    "ErtlFunctionalGroupsFinder.java". Create package 

diff --git a/CDK/CDK info.txt b/CDK/CDK info.txt
@@ -1 +1 @@
-"cdk-2.7.1.jar" is the Chemistry Development Kit (CDK) library "ErtlFunctionalGroupsFinder.java" was developed for.
+"cdk-2.8.jar" is the Chemistry Development Kit (CDK) library "ErtlFunctionalGroupsFinder.java" was developed for.
diff --git a/CDK/cdk-2.7.1.jar → CDK/cdk-2.8.jar b/CDK/cdk-2.7.1.jar → CDK/cdk-2.8.jar
diff --git a/Evaluation/Evaluation usage instructions.txt b/Evaluation/Evaluation usage instructions.txt
@@ -8,7 +8,7 @@ Evaluation usage instructions with your Java IDE of choice and Java 1.8
    alternative you may directly add jar libraries "junit-4.12.jar" and 
    "hamcrest-core-1.3.jar" - located in super directory "JUnit 4" - for unit 
    testing).
-2. Add "cdk-2.7.1.jar" library - located in super directory "CDK" - to the Java 
+2. Add "cdk-2.8.jar" library - located in super directory "CDK" - to the Java 
    project (if necessary)
 3. Create package "org.openscience.cdk.tools" (if necessary) and import file 
    "ErtlFunctionalGroupsFinder.java". Create package 

diff --git a/Performance/Performance usage instructions.txt b/Performance/Performance usage instructions.txt
@@ -1,7 +1,7 @@
 --------------------------------------------------------------------------------
 Performance usage instructions with Java 1.8 (or higher)
 --------------------------------------------------------------------------------
-1. Install Java 1.8 on your machine (if necessary)
+1. Install Java 1.8 (or higher) on your machine (if necessary)
 2. Copy content of sub-folder "jar" to a destination directory on your 
    machine with read/write access.
 3. Copy SD-file with your molecule library to the destination directory on your 

diff --git a/Performance/jar/ErtlFunctionalGroupsFinderPerformanceTest.jar b/Performance/jar/ErtlFunctionalGroupsFinderPerformanceTest.jar
diff --git a/Performance/jar/cdk-2.7.1.jar b/Performance/jar/cdk-2.7.1.jar
diff --git a/README.md b/README.md
@@ -5,7 +5,7 @@ The algorithm for automated functional groups detection and extraction of organi
 
 Folder **Basic** contains the basic ErtlFunctionalGroupsFinder code and test code for integration in Java projects (see instructions in *Basic usage instructions.txt*).
 
-Folder **CDK** contains CDK library jar file *cdk-2.7.1.jar* that ErtlFunctionalGroupsFinder works with.
+Folder **CDK** contains CDK library jar file *cdk-2.8.jar* that ErtlFunctionalGroupsFinder works with.
 
 Folder **Evaluation** contains sample code for evaluation of functional groups with ErtlFunctionalGroupsFinder (see instructions in *Evaluation usage instructions.txt*).
 

diff --git a/Utility/Utility usage instructions.txt b/Utility/Utility usage instructions.txt
@@ -7,7 +7,7 @@ Utility usage instructions with your Java IDE of choice and Java 1.8 (or higher)
    alternative you may directly add jar libraries "junit-4.12.jar" and 
    "hamcrest-core-1.3.jar" - located in super directory "JUnit 4" - for unit 
    testing).
-2. Add "cdk-2.7.1.jar" library - located in super directory "CDK" - to the Java 
+2. Add "cdk-2.8.jar" library - located in super directory "CDK" - to the Java 
    project (if necessary)
 3. Create package "org.openscience.cdk.tools" (if necessary) and import files 
    "ErtlFunctionalGroupsFinder.java" and