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3mmaRand · Nov 26, 2023 · 43ae7d1 · 43ae7d1
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Showing 38 changed files with 1,549 additions and 894 deletions.
diff --git a/core/core.html b/core/core.html
@@ -125,6 +125,10 @@
     <a class="nav-link" href="../images/images.html" rel="" target="">
  <span class="menu-text">Image Analysis</span></a>
   </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="../structures/structures.html" rel="" target="">
+ <span class="menu-text">Structure Analysis</span></a>
+  </li>  
 </ul>
             <div class="quarto-navbar-tools ms-auto">
     <a href="https://twitter.com/er_13" rel="" title="Emma's Twitter" class="quarto-navigation-tool px-1" aria-label="Emma's Twitter"><i class="bi bi-twitter"></i></a>
@@ -337,7 +341,7 @@ <h1 class="title">Core Data Analysis</h1>
     <div>
     <div class="quarto-title-meta-heading">Published</div>
     <div class="quarto-title-meta-contents">
-      <p class="date">22 November, 2023</p>
+      <p class="date">26 November, 2023</p>
     </div>
   </div>
 

diff --git a/core/week-1/overview.html b/core/week-1/overview.html
@@ -125,6 +125,10 @@
     <a class="nav-link" href="../../images/images.html" rel="" target="">
  <span class="menu-text">Image Analysis</span></a>
   </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="../../structures/structures.html" rel="" target="">
+ <span class="menu-text">Structure Analysis</span></a>
+  </li>  
 </ul>
             <div class="quarto-navbar-tools ms-auto">
     <a href="https://twitter.com/er_13" rel="" title="Emma's Twitter" class="quarto-navigation-tool px-1" aria-label="Emma's Twitter"><i class="bi bi-twitter"></i></a>
@@ -333,7 +337,7 @@ <h1 class="title">Overview</h1>
     <div>
     <div class="quarto-title-meta-heading">Published</div>
     <div class="quarto-title-meta-contents">
-      <p class="date">22 November, 2023</p>
+      <p class="date">26 November, 2023</p>
     </div>
   </div>
 

diff --git a/core/week-1/study_after_workshop.html b/core/week-1/study_after_workshop.html
@@ -125,6 +125,10 @@
     <a class="nav-link" href="../../images/images.html" rel="" target="">
  <span class="menu-text">Image Analysis</span></a>
   </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="../../structures/structures.html" rel="" target="">
+ <span class="menu-text">Structure Analysis</span></a>
+  </li>  
 </ul>
             <div class="quarto-navbar-tools ms-auto">
     <a href="https://twitter.com/er_13" rel="" title="Emma's Twitter" class="quarto-navigation-tool px-1" aria-label="Emma's Twitter"><i class="bi bi-twitter"></i></a>
@@ -333,7 +337,7 @@ <h1 class="title">Independent Study to consolidate this week</h1>
     <div>
     <div class="quarto-title-meta-heading">Published</div>
     <div class="quarto-title-meta-contents">
-      <p class="date">22 November, 2023</p>
+      <p class="date">26 November, 2023</p>
     </div>
   </div>
 

diff --git a/core/week-1/study_before_workshop.html b/core/week-1/study_before_workshop.html
@@ -125,6 +125,10 @@
     <a class="nav-link" href="../../images/images.html" rel="" target="">
  <span class="menu-text">Image Analysis</span></a>
   </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="../../structures/structures.html" rel="" target="">
+ <span class="menu-text">Structure Analysis</span></a>
+  </li>  
 </ul>
             <div class="quarto-navbar-tools ms-auto">
     <a href="https://twitter.com/er_13" rel="" title="Emma's Twitter" class="quarto-navigation-tool px-1" aria-label="Emma's Twitter"><i class="bi bi-twitter"></i></a>
@@ -326,7 +330,7 @@ <h1 class="title">Independent Study to prepare for workshop</h1>
     <div>
     <div class="quarto-title-meta-heading">Published</div>
     <div class="quarto-title-meta-contents">
-      <p class="date">22 November, 2023</p>
+      <p class="date">26 November, 2023</p>
     </div>
   </div>
 

diff --git a/core/week-1/workshop.html b/core/week-1/workshop.html
@@ -144,6 +144,10 @@
     <a class="nav-link" href="../../images/images.html" rel="" target="">
  <span class="menu-text">Image Analysis</span></a>
   </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="../../structures/structures.html" rel="" target="">
+ <span class="menu-text">Structure Analysis</span></a>
+  </li>  
 </ul>
             <div class="quarto-navbar-tools ms-auto">
     <a href="https://twitter.com/er_13" rel="" title="Emma's Twitter" class="quarto-navigation-tool px-1" aria-label="Emma's Twitter"><i class="bi bi-twitter"></i></a>
@@ -386,7 +390,7 @@ <h1 class="title">Workshop</h1>
     <div>
     <div class="quarto-title-meta-heading">Published</div>
     <div class="quarto-title-meta-contents">
-      <p class="date">22 November, 2023</p>
+      <p class="date">26 November, 2023</p>
     </div>
   </div>
 

diff --git a/core/week-11/overview.html b/core/week-11/overview.html
@@ -125,6 +125,10 @@
     <a class="nav-link" href="../../images/images.html" rel="" target="">
  <span class="menu-text">Image Analysis</span></a>
   </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="../../structures/structures.html" rel="" target="">
+ <span class="menu-text">Structure Analysis</span></a>
+  </li>  
 </ul>
             <div class="quarto-navbar-tools ms-auto">
     <a href="https://twitter.com/er_13" rel="" title="Emma's Twitter" class="quarto-navigation-tool px-1" aria-label="Emma's Twitter"><i class="bi bi-twitter"></i></a>
@@ -333,7 +337,7 @@ <h1 class="title">Overview</h1>
     <div>
     <div class="quarto-title-meta-heading">Published</div>
     <div class="quarto-title-meta-contents">
-      <p class="date">22 November, 2023</p>
+      <p class="date">26 November, 2023</p>
     </div>
   </div>
 

diff --git a/core/week-11/study_after_workshop.html b/core/week-11/study_after_workshop.html
@@ -142,6 +142,10 @@
     <a class="nav-link" href="../../images/images.html" rel="" target="">
  <span class="menu-text">Image Analysis</span></a>
   </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="../../structures/structures.html" rel="" target="">
+ <span class="menu-text">Structure Analysis</span></a>
+  </li>  
 </ul>
 <div class="quarto-navbar-tools ms-auto">
     <a href="https://twitter.com/er_13" rel="" title="Emma's Twitter" class="quarto-navigation-tool px-1" aria-label="Emma's Twitter"><i class="bi bi-twitter"></i></a>
@@ -337,7 +341,7 @@ <h1 class="title">Independent Study to consolidate this week</h1>
     <div>
     <div class="quarto-title-meta-heading">Published</div>
     <div class="quarto-title-meta-contents">
-      <p class="date">22 November, 2023</p>
+      <p class="date">26 November, 2023</p>
     </div>
   </div>
 

diff --git a/core/week-11/study_before_workshop.html b/core/week-11/study_before_workshop.html
@@ -125,6 +125,10 @@
     <a class="nav-link" href="../../images/images.html" rel="" target="">
  <span class="menu-text">Image Analysis</span></a>
   </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="../../structures/structures.html" rel="" target="">
+ <span class="menu-text">Structure Analysis</span></a>
+  </li>  
 </ul>
             <div class="quarto-navbar-tools ms-auto">
     <a href="https://twitter.com/er_13" rel="" title="Emma's Twitter" class="quarto-navigation-tool px-1" aria-label="Emma's Twitter"><i class="bi bi-twitter"></i></a>
@@ -326,7 +330,7 @@ <h1 class="title">Independent Study to prepare for workshop</h1>
     <div>
     <div class="quarto-title-meta-heading">Published</div>
     <div class="quarto-title-meta-contents">
-      <p class="date">22 November, 2023</p>
+      <p class="date">26 November, 2023</p>
     </div>
   </div>
 

diff --git a/core/week-11/workshop.html b/core/week-11/workshop.html
@@ -127,6 +127,10 @@
     <a class="nav-link" href="../../images/images.html" rel="" target="">
  <span class="menu-text">Image Analysis</span></a>
   </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="../../structures/structures.html" rel="" target="">
+ <span class="menu-text">Structure Analysis</span></a>
+  </li>  
 </ul>
 <div class="quarto-navbar-tools ms-auto">
     <a href="https://twitter.com/er_13" rel="" title="Emma's Twitter" class="quarto-navigation-tool px-1" aria-label="Emma's Twitter"><i class="bi bi-twitter"></i></a>
@@ -339,7 +343,7 @@ <h1 class="title">Workshop</h1>
     <div>
     <div class="quarto-title-meta-heading">Published</div>
     <div class="quarto-title-meta-contents">
-      <p class="date">22 November, 2023</p>
+      <p class="date">26 November, 2023</p>
     </div>
   </div>
 

diff --git a/core/week-2/overview.html b/core/week-2/overview.html
@@ -125,6 +125,10 @@
     <a class="nav-link" href="../../images/images.html" rel="" target="">
  <span class="menu-text">Image Analysis</span></a>
   </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="../../structures/structures.html" rel="" target="">
+ <span class="menu-text">Structure Analysis</span></a>
+  </li>  
 </ul>
             <div class="quarto-navbar-tools ms-auto">
     <a href="https://twitter.com/er_13" rel="" title="Emma's Twitter" class="quarto-navigation-tool px-1" aria-label="Emma's Twitter"><i class="bi bi-twitter"></i></a>
@@ -324,7 +328,7 @@ <h1 class="title">Overview</h1>
     <div>
     <div class="quarto-title-meta-heading">Published</div>
     <div class="quarto-title-meta-contents">
-      <p class="date">22 November, 2023</p>
+      <p class="date">26 November, 2023</p>
     </div>
   </div>
 

diff --git a/core/week-2/study_after_workshop.html b/core/week-2/study_after_workshop.html
@@ -125,6 +125,10 @@
     <a class="nav-link" href="../../images/images.html" rel="" target="">
  <span class="menu-text">Image Analysis</span></a>
   </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="../../structures/structures.html" rel="" target="">
+ <span class="menu-text">Structure Analysis</span></a>
+  </li>  
 </ul>
             <div class="quarto-navbar-tools ms-auto">
     <a href="https://twitter.com/er_13" rel="" title="Emma's Twitter" class="quarto-navigation-tool px-1" aria-label="Emma's Twitter"><i class="bi bi-twitter"></i></a>
@@ -324,7 +328,7 @@ <h1 class="title">Independent Study to consolidate this week</h1>
     <div>
     <div class="quarto-title-meta-heading">Published</div>
     <div class="quarto-title-meta-contents">
-      <p class="date">22 November, 2023</p>
+      <p class="date">26 November, 2023</p>
     </div>
   </div>
 

diff --git a/core/week-2/study_before_workshop.html b/core/week-2/study_before_workshop.html
@@ -444,7 +444,7 @@
 </div>
 </div>
 
-  <p class="date">22 November, 2023</p>
+  <p class="date">26 November, 2023</p>
 </section><section id="overview" class="slide level2"><h2>Overview</h2>
 <ul>
 <li>RStudio Projects revisited

diff --git a/core/week-2/workshop.html b/core/week-2/workshop.html
@@ -161,6 +161,10 @@
     <a class="nav-link" href="../../images/images.html" rel="" target="">
  <span class="menu-text">Image Analysis</span></a>
   </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="../../structures/structures.html" rel="" target="">
+ <span class="menu-text">Structure Analysis</span></a>
+  </li>  
 </ul>
 <div class="quarto-navbar-tools ms-auto">
     <a href="https://twitter.com/er_13" rel="" title="Emma's Twitter" class="quarto-navigation-tool px-1" aria-label="Emma's Twitter"><i class="bi bi-twitter"></i></a>
@@ -400,7 +404,7 @@ <h1 class="title">Workshop</h1>
     <div>
     <div class="quarto-title-meta-heading">Published</div>
     <div class="quarto-title-meta-contents">
-      <p class="date">22 November, 2023</p>
+      <p class="date">26 November, 2023</p>
     </div>
   </div>
 
@@ -489,58 +493,58 @@ <h1 class="title">Workshop</h1>
 <div class="sourceCode cell-code" id="cb9"><pre class="sourceCode bash code-with-copy"><code class="sourceCode bash"><span id="cb9-1"><a href="#cb9-1" aria-hidden="true" tabindex="-1"></a><span class="fu">ls</span> <span class="at">-l</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
 <div class="cell-output cell-output-stdout">
 <pre><code>total 212
-drwxr-xr-x 2 runner docker  4096 Nov 22 19:23 data
-drwxr-xr-x 2 runner docker  4096 Nov 22 19:23 images
--rw-r--r-- 1 runner docker  1597 Nov 22 19:23 overview.qmd
--rw-r--r-- 1 runner docker 25383 Nov 22 19:28 study_after_workshop.html
--rw-r--r-- 1 runner docker   184 Nov 22 19:23 study_after_workshop.qmd
--rw-r--r-- 1 runner docker 70840 Nov 22 19:28 study_before_workshop.html
--rw-r--r-- 1 runner docker  4807 Nov 22 19:23 study_before_workshop.ipynb
--rw-r--r-- 1 runner docker 13029 Nov 22 19:23 study_before_workshop.qmd
--rw-r--r-- 1 runner docker 44938 Nov 22 19:23 workshop.html
--rw-r--r-- 1 runner docker  8550 Nov 22 19:23 workshop.qmd
--rw-r--r-- 1 runner docker  8564 Nov 22 19:28 workshop.rmarkdown
-drwxr-xr-x 3 runner docker  4096 Nov 22 19:23 workshop_files</code></pre>
+drwxr-xr-x 2 runner docker  4096 Nov 26 14:13 data
+drwxr-xr-x 2 runner docker  4096 Nov 26 14:13 images
+-rw-r--r-- 1 runner docker  1597 Nov 26 14:13 overview.qmd
+-rw-r--r-- 1 runner docker 25554 Nov 26 14:18 study_after_workshop.html
+-rw-r--r-- 1 runner docker   184 Nov 26 14:13 study_after_workshop.qmd
+-rw-r--r-- 1 runner docker 70840 Nov 26 14:18 study_before_workshop.html
+-rw-r--r-- 1 runner docker  4807 Nov 26 14:13 study_before_workshop.ipynb
+-rw-r--r-- 1 runner docker 13029 Nov 26 14:13 study_before_workshop.qmd
+-rw-r--r-- 1 runner docker 44938 Nov 26 14:13 workshop.html
+-rw-r--r-- 1 runner docker  8550 Nov 26 14:13 workshop.qmd
+-rw-r--r-- 1 runner docker  8564 Nov 26 14:18 workshop.rmarkdown
+drwxr-xr-x 3 runner docker  4096 Nov 26 14:13 workshop_files</code></pre>
 </div>
 </div>
 <p>You can use more than one option at once. The <code>-h</code> option stands for “human readable” and makes the file sizes easier to understand for humans:</p>
 <div class="cell">
 <div class="sourceCode cell-code" id="cb11"><pre class="sourceCode bash code-with-copy"><code class="sourceCode bash"><span id="cb11-1"><a href="#cb11-1" aria-hidden="true" tabindex="-1"></a><span class="fu">ls</span> <span class="at">-hl</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
 <div class="cell-output cell-output-stdout">
 <pre><code>total 212K
-drwxr-xr-x 2 runner docker 4.0K Nov 22 19:23 data
-drwxr-xr-x 2 runner docker 4.0K Nov 22 19:23 images
--rw-r--r-- 1 runner docker 1.6K Nov 22 19:23 overview.qmd
--rw-r--r-- 1 runner docker  25K Nov 22 19:28 study_after_workshop.html
--rw-r--r-- 1 runner docker  184 Nov 22 19:23 study_after_workshop.qmd
--rw-r--r-- 1 runner docker  70K Nov 22 19:28 study_before_workshop.html
--rw-r--r-- 1 runner docker 4.7K Nov 22 19:23 study_before_workshop.ipynb
--rw-r--r-- 1 runner docker  13K Nov 22 19:23 study_before_workshop.qmd
--rw-r--r-- 1 runner docker  44K Nov 22 19:23 workshop.html
--rw-r--r-- 1 runner docker 8.4K Nov 22 19:23 workshop.qmd
--rw-r--r-- 1 runner docker 8.4K Nov 22 19:28 workshop.rmarkdown
-drwxr-xr-x 3 runner docker 4.0K Nov 22 19:23 workshop_files</code></pre>
+drwxr-xr-x 2 runner docker 4.0K Nov 26 14:13 data
+drwxr-xr-x 2 runner docker 4.0K Nov 26 14:13 images
+-rw-r--r-- 1 runner docker 1.6K Nov 26 14:13 overview.qmd
+-rw-r--r-- 1 runner docker  25K Nov 26 14:18 study_after_workshop.html
+-rw-r--r-- 1 runner docker  184 Nov 26 14:13 study_after_workshop.qmd
+-rw-r--r-- 1 runner docker  70K Nov 26 14:18 study_before_workshop.html
+-rw-r--r-- 1 runner docker 4.7K Nov 26 14:13 study_before_workshop.ipynb
+-rw-r--r-- 1 runner docker  13K Nov 26 14:13 study_before_workshop.qmd
+-rw-r--r-- 1 runner docker  44K Nov 26 14:13 workshop.html
+-rw-r--r-- 1 runner docker 8.4K Nov 26 14:13 workshop.qmd
+-rw-r--r-- 1 runner docker 8.4K Nov 26 14:18 workshop.rmarkdown
+drwxr-xr-x 3 runner docker 4.0K Nov 26 14:13 workshop_files</code></pre>
 </div>
 </div>
 <p>The <code>-a</code> option stands for “all” and shows us all the files, including hidden files.</p>
 <div class="cell">
 <div class="sourceCode cell-code" id="cb13"><pre class="sourceCode bash code-with-copy"><code class="sourceCode bash"><span id="cb13-1"><a href="#cb13-1" aria-hidden="true" tabindex="-1"></a><span class="fu">ls</span> <span class="at">-alh</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
 <div class="cell-output cell-output-stdout">
 <pre><code>total 220K
-drwxr-xr-x 5 runner docker 4.0K Nov 22 19:28 .
-drwxr-xr-x 6 runner docker 4.0K Nov 22 19:27 ..
-drwxr-xr-x 2 runner docker 4.0K Nov 22 19:23 data
-drwxr-xr-x 2 runner docker 4.0K Nov 22 19:23 images
--rw-r--r-- 1 runner docker 1.6K Nov 22 19:23 overview.qmd
--rw-r--r-- 1 runner docker  25K Nov 22 19:28 study_after_workshop.html
--rw-r--r-- 1 runner docker  184 Nov 22 19:23 study_after_workshop.qmd
--rw-r--r-- 1 runner docker  70K Nov 22 19:28 study_before_workshop.html
--rw-r--r-- 1 runner docker 4.7K Nov 22 19:23 study_before_workshop.ipynb
--rw-r--r-- 1 runner docker  13K Nov 22 19:23 study_before_workshop.qmd
--rw-r--r-- 1 runner docker  44K Nov 22 19:23 workshop.html
--rw-r--r-- 1 runner docker 8.4K Nov 22 19:23 workshop.qmd
--rw-r--r-- 1 runner docker 8.4K Nov 22 19:28 workshop.rmarkdown
-drwxr-xr-x 3 runner docker 4.0K Nov 22 19:23 workshop_files</code></pre>
+drwxr-xr-x 5 runner docker 4.0K Nov 26 14:18 .
+drwxr-xr-x 6 runner docker 4.0K Nov 26 14:17 ..
+drwxr-xr-x 2 runner docker 4.0K Nov 26 14:13 data
+drwxr-xr-x 2 runner docker 4.0K Nov 26 14:13 images
+-rw-r--r-- 1 runner docker 1.6K Nov 26 14:13 overview.qmd
+-rw-r--r-- 1 runner docker  25K Nov 26 14:18 study_after_workshop.html
+-rw-r--r-- 1 runner docker  184 Nov 26 14:13 study_after_workshop.qmd
+-rw-r--r-- 1 runner docker  70K Nov 26 14:18 study_before_workshop.html
+-rw-r--r-- 1 runner docker 4.7K Nov 26 14:13 study_before_workshop.ipynb
+-rw-r--r-- 1 runner docker  13K Nov 26 14:13 study_before_workshop.qmd
+-rw-r--r-- 1 runner docker  44K Nov 26 14:13 workshop.html
+-rw-r--r-- 1 runner docker 8.4K Nov 26 14:13 workshop.qmd
+-rw-r--r-- 1 runner docker 8.4K Nov 26 14:18 workshop.rmarkdown
+drwxr-xr-x 3 runner docker 4.0K Nov 26 14:13 workshop_files</code></pre>
 </div>
 </div>
 <p>You can move about with the <code>cd</code> command, which stands for “change directory”. You can use it to move into a directory by specifying the path to the directory:</p>

diff --git a/core/week-6/overview.html b/core/week-6/overview.html
@@ -125,6 +125,10 @@
     <a class="nav-link" href="../../images/images.html" rel="" target="">
  <span class="menu-text">Image Analysis</span></a>
   </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="../../structures/structures.html" rel="" target="">
+ <span class="menu-text">Structure Analysis</span></a>
+  </li>  
 </ul>
             <div class="quarto-navbar-tools ms-auto">
     <a href="https://twitter.com/er_13" rel="" title="Emma's Twitter" class="quarto-navigation-tool px-1" aria-label="Emma's Twitter"><i class="bi bi-twitter"></i></a>
@@ -332,7 +336,7 @@ <h1 class="title">Overview</h1>
     <div>
     <div class="quarto-title-meta-heading">Published</div>
     <div class="quarto-title-meta-contents">
-      <p class="date">22 November, 2023</p>
+      <p class="date">26 November, 2023</p>
     </div>
   </div>
 

diff --git a/core/week-6/study_after_workshop.html b/core/week-6/study_after_workshop.html
@@ -125,6 +125,10 @@
     <a class="nav-link" href="../../images/images.html" rel="" target="">
  <span class="menu-text">Image Analysis</span></a>
   </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="../../structures/structures.html" rel="" target="">
+ <span class="menu-text">Structure Analysis</span></a>
+  </li>  
 </ul>
             <div class="quarto-navbar-tools ms-auto">
     <a href="https://twitter.com/er_13" rel="" title="Emma's Twitter" class="quarto-navigation-tool px-1" aria-label="Emma's Twitter"><i class="bi bi-twitter"></i></a>
@@ -326,7 +330,7 @@ <h1 class="title">Independent Study to consolidate this week</h1>
     <div>
     <div class="quarto-title-meta-heading">Published</div>
     <div class="quarto-title-meta-contents">
-      <p class="date">22 November, 2023</p>
+      <p class="date">26 November, 2023</p>
     </div>
   </div>