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Issues list

Include MLVA template enhancement New feature or request
#324 opened Aug 29, 2024 by Shettland
Update ariba singularity image in characterization/REFERENCES bug Something isn't working
#323 opened Aug 28, 2024 by Shettland
Change incorrect path in characterization template bug Something isn't working
#322 opened Aug 27, 2024 by Shettland
FASTQ integrity check to be added to new-service tool
#319 opened Aug 20, 2024 by juanledesma78
Outdated pipeline version in RNASEQ template bug Something isn't working
#315 opened Aug 12, 2024 by Shettland
Error when profile_classification_area is missing bug Something isn't working
#314 opened Aug 12, 2024 by Shettland
Update release version tag in __main__ bug Something isn't working
#313 opened Aug 12, 2024 by Shettland
Kraken save_no_host config saves both unclassified and classified reads and files
#312 opened Aug 12, 2024 by svarona
viralrecon template remove sorted.bams only for amplicons, not for metagenomic
#311 opened Aug 12, 2024 by svarona
Bioinfo-doc does not apply indentations in the email notes
#308 opened Aug 8, 2024 by victor5lm
@victor5lm
Non-interactive mode for lablog_viralrecon running
#302 opened Jul 31, 2024 by jaimeozaez
@jaimeozaez
Create a script for getting stats from outbreak services
#292 opened Jun 27, 2024 by jaimeozaez
@jaimeozaez
Improve broken symlink handling in excel_generator.py bug Something isn't working
#242 opened Apr 22, 2024 by Shettland Template cleaning and minor functionality improvements
@Shettland
Include versions.yml in deliverie's pdf and markdowns enhancement New feature or request urgent
#219 opened Apr 4, 2024 by Shettland Template cleaning and minor functionality improvements
@Shettland @victor5lm
Bioinfo-doc does not offer to write delivery notes for the email through prompt after using a txt file bug Something isn't working
#216 opened Apr 4, 2024 by jaimeozaez Template cleaning and minor functionality improvements
@jaimeozaez
Bioinfo-doc does not properly resume delivery function bug Something isn't working
#215 opened Apr 4, 2024 by jaimeozaez Template cleaning and minor functionality improvements
@jaimeozaez
Add permission fixing in finish module enhancement New feature or request urgent
#212 opened Mar 18, 2024 by saramonzon Template cleaning and minor functionality improvements
@saramonzon @victor5lm
2
Improvement of error message when resolution ID does not exist bug Something isn't working
#210 opened Mar 14, 2024 by cmglastra Template cleaning and minor functionality improvements
@saramonzon @OPSergio
Better handling of scratch module execution bug Something isn't working enhancement New feature or request
#206 opened Mar 1, 2024 by Shettland
Incorrect parsing of file sample names when long read files are present
#188 opened Jan 19, 2024 by Daniel-VM
Separate templates folder into another repo enhancement New feature or request
#184 opened Jan 16, 2024 by svarona Template cleaning and minor functionality improvements
Add Recentrifuge to seek_and_destroy pipeline
#163 opened Oct 2, 2023 by saramonzon
1
Add option to merge gene description (function) in DE
#139 opened Apr 11, 2023 by svarona
1 task
@svarona
Include proper logging in all steps
#64 opened Feb 28, 2022 by saramonzon v.1.0.0
@svarona
Rename and documentation service catalog documentation Improvements or additions to documentation urgent
#4 opened Feb 7, 2022 by saramonzon
@saramonzon @svarona
4
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