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fix: missing specimen sources #3044

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fix: missing specimen sources #3044

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mcmcgrath13
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@mcmcgrath13 mcmcgrath13 commented Dec 12, 2024

PULL REQUEST

Summary

Update FHIR converter with fix that brings along specimen source correctly. Counterpart to skylight-hq/FHIR-Converter#22

Related Issue

Fixes #2926

Additional Information

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codecov bot commented Dec 12, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 82.67%. Comparing base (5aed2ab) to head (0cb40b4).

Additional details and impacted files
@@            Coverage Diff             @@
##             main    #3044      +/-   ##
==========================================
- Coverage   86.00%   82.67%   -3.34%     
==========================================
  Files         162      116      -46     
  Lines       10855     7278    -3577     
==========================================
- Hits         9336     6017    -3319     
+ Misses       1519     1261     -258     
Flag Coverage Δ
fhir-converter 78.83% <ø> (ø)
ingestion 64.08% <ø> (ø)
message-parser 96.53% <ø> (ø)
message-refiner 92.85% <ø> (ø)
orchestration 85.67% <ø> (ø)
record-linkage ?
trigger-code-reference ?
validation ?

Flags with carried forward coverage won't be shown. Click here to find out more.

see 46 files with indirect coverage changes

@@ -1,7 +1,7 @@
FROM mcr.microsoft.com/dotnet/sdk:6.0 AS build

# Download FHIR-Converter
RUN git clone https://github.com/skylight-hq/FHIR-Converter.git --branch v7.0-skylight-15 --single-branch /build/FHIR-Converter
RUN git clone https://github.com/skylight-hq/FHIR-Converter.git --branch mcm/fix-spec-source --single-branch /build/FHIR-Converter
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todo: update to released version

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BUG: Some specimen sources are missed in FHIR converter
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