Merge branch 'master' into dependabot/npm_and_yarn/frontend-react/rea…

…ct-query-6802d37af6

prime-router/src/main/resources/metadata/hl7_mapping/receivers/Common/observation-to-nte/unwanted-conditions-to-notes.yml

@@ -0,0 +1,42 @@
+# $schema: ./../../../../../../../../metadata/json_schema/fhir/fhir-to-hl7-mapping.json
+
+constants:
+  commentCondition: '%resource.code.coding.code.exists() and %resource.code.text.exists()'
+
+elements:
+  - name: note-id
+    value: [ '%noteIndex + 1' ]
+    hl7Spec: [ '%{hl7NotePath}/NTE(%{noteIndex})-1' ]
+
+  - name: note-source
+    value: [ '%resource.extension(%`rsext-note-source`).value' ]
+    hl7Spec: [ '%{hl7NotePath}/NTE(%{noteIndex})-2' ]
+
+  - name: unwanted-condition-source
+    condition: '%commentCondition'
+    value: ['"O"']
+    hl7Spec: [ '%{hl7NotePath}/NTE(%{noteIndex})-2' ]
+
+  - name: unwanted-condition-comment-string
+    condition: '%commentCondition'
+    value: [ '"OBX filtered for identifier = " + %resource.code.coding.code + " - " + %resource.code.text + "; value = " + %resource.value.coding.code + " - " + %resource.value.coding.display + ". OBX was removed due to your jurisdictional reporting rules indicating this result is not reportable."' ]
+    hl7Spec: [ '%{hl7NotePath}/NTE(%{noteIndex})-3' ]
+
+  - name: note-comment
+    condition: '%context.author.exists().not() or (%context.author.exists() and %context.author.is(string).not())'
+    resource: '%resource.text.union(%resource.extension(%`rsext-note-comment`).tail().value)'
+    resourceIndex: stIndex
+    constants:
+      stField: '%{hl7NotePath}/NTE(%{noteIndex})-3(%{stIndex})'
+    schema: classpath:/metadata/hl7_mapping/datatypes/annotation/ST.yml
+
+  - name: note-comment-author-string
+    condition: '%resource.author.exists() and %resource.author.is(string)'
+    value: [ '%resource.text + " Authored by: " + %resource.author' ]
+    hl7Spec: [ '%{hl7NotePath}/NTE(%{noteIndex})-3' ]
+
+  - name: note-comment-type-identifier
+    resource: '%resource.extension(%`rsext-note-type`).value'
+    constants:
+      cweField: '%{hl7NotePath}/NTE(%{noteIndex})-4'
+    schema: classpath:/metadata/hl7_mapping/datatypes/codeableConcept/CWE.yml

prime-router/src/main/resources/metadata/hl7_mapping/receivers/STLTs/Test/test-receiver-transform.yml

@@ -0,0 +1,15 @@
+hl7Class: ca.uhn.hl7v2.model.v251.message.ORU_R01
+
+extends: classpath:/metadata/hl7_mapping/ORU_R01/ORU_R01-base.yml
+
+elements:
+
+  - name: observation-result-with-aoe
+    resource: "%resource.result.resolve().where(code.coding.extension('https://reportstream.cdc.gov/fhir/StructureDefinition/condition-code').value.where(code in ('55735004' | '840539006'))) | %resource.basedOn.resolve().supportingInfo.resolve()"
+
+  - name: order-note
+    resource: "%resource.basedOn.resolve().note | %resource.result.resolve().where(code.coding.extension('https://reportstream.cdc.gov/fhir/StructureDefinition/condition-code').value.where(code in ('55735004' | '840539006')).exists().not())"
+    schema: classpath:/metadata/hl7_mapping/receivers/Common/observation-to-nte/unwanted-conditions-to-notes.yml
+
+
+

prime-router/src/testIntegration/resources/datatests/FHIR_to_HL7/mars_unwanted_condition_to_notes.hl7

@@ -0,0 +1,15 @@
+MSH|^~\&|CDC PRIME - Atlanta^2.16.840.1.114222.4.1.237821^ISO|Testing Lab^12D4567890^CLIA|||20240826224038+0000||ORU^R01^ORU_R01|ecfbc6c0-0c32-4cf8-adc2-9134281110d8|P|2.5.1|||NE|NE|USA|UNICODE UTF-8|ENG^English^ISO||PHLabReport-NoAck^ELR_Receiver^2.16.840.1.113883.9.11^ISO
+SFT|Centers for Disease Control and Prevention|0.2-SNAPSHOT|PRIME ReportStream|0.2-SNAPSHOT||20240826161326+0000
+PID|1||6b9b4aa8-f333-4ea5-8dfa-2a3cd6b4fd86^^^Testing Lab&12D4567890&CLIA^PI^Testing Lab&12D4567890&CLIA||Kholin^Adolin^^^^^L||20031210|M||1002-5^native^^^^^2.5.1^^native|2251 Airport Rd^^Greenfield^IA^50849-8101^USA^^^Adair||(540) 867 5309^PRS^CP^^1^540^8675309^^^^^(540) 867 5309|||||||||N^Not Hispanic or Latino^HL70189^^^^2.9^^Not Hispanic or Latino||||||||N
+ORC|RE|ecfbc6c0-0c32-4cf8-adc2-9134281110d8^Testing Lab^12D4567890^CLIA|ecfbc6c0-0c32-4cf8-adc2-9134281110d8^Testing Lab^12D4567890^CLIA|||||||||1245319599^McTester^Phil^^^^^^NPI&2.16.840.1.113883.4.6&ISO^L^^^NPI||(530) 867 5309^WPN^PH^^1^530^8675309^^^^^(530) 867 5309|20240826224030+0000||||||Testing Lab^L^^^^CLIA&2.16.840.1.113883.4.7&ISO^XX^^^12D4567890|123 Beach Way^^Denver^CO^80210^USA|(530) 867 5309^WPN^PH^^1^530^8675309^^^^^(530) 867 5309|321 Ocean Drive^^Denver^CO^80210^USA
+OBR|1|ecfbc6c0-0c32-4cf8-adc2-9134281110d8^Testing Lab^12D4567890^CLIA|ecfbc6c0-0c32-4cf8-adc2-9134281110d8^Testing Lab^12D4567890^CLIA|97099-6^Influenza virus A and B and SARS-CoV-2 (COVID-19) Ag panel - Upper respiratory specimen by Rapid immunoassay^LN|||20240826222530+0000|||||||||1245319599^McTester^Phil^^^^^^NPI&2.16.840.1.113883.4.6&ISO^L^^^NPI|(530) 867 5309^WPN^PH^^1^530^8675309^^^^^(530) 867 5309|||||20240826224038+0000|||F
+NTE|1||This is a note
+NTE|2|O|OBX filtered for identifier = 80382-5 - Flu A; value = 260373001 - Detected. OBX was removed due to your jurisdictional reporting rules indicating this result is not reportable.
+NTE|3|O|OBX filtered for identifier = 80383-3 - Flu B; value = 260415000 - Not detected. OBX was removed due to your jurisdictional reporting rules indicating this result is not reportable.
+OBX|1|CWE|97097-0^SARS-CoV-2 (COVID-19) Ag [Presence] in Upper respiratory specimen by Rapid immunoassay^LN^^^^^^COVID-19||260373001^Detected^SCT|||A^Abnormal^HL70078^^^^2.7|||F|||20240826222530+0000|12D4567890^Testing Lab^CLIA||BD Veritor System for Rapid Detection of SARS-CoV-2 \T\ Flu A+B_Becton, Dickinson and Company (BD)^BD Veritor System for Rapid Detection of SARS-CoV-2 \T\ Flu A+B^^^^^^^BD Veritor System for Rapid Detection of SARS-CoV-2 \T\ Flu A+B_Becton, Dickinson and Company (BD)|BD Veritor Plus System_Becton Dickinson^^MNI|20240826224030+0000||||Testing Lab^L^^^^CLIA&2.16.840.1.113883.4.7&ISO^XX^^^12D4567890|123 Beach Way^^Denver^CO^80210^USA
+OBX|2|CWE|95419-8^Has symptoms related to condition of interest^LN^^^^2.69^^Has symptoms related to condition of interest||N^No^HL70136|||^^^^^^2.7|||F|||20240826222530+0000|12D4567890^Testing Lab^CLIA||||||||Testing Lab^L^^^^CLIA&2.16.840.1.113883.4.7&ISO^XX^^^12D4567890|123 Beach Way^^Denver^CO^80210^USA|||||QST
+OBX|3|CWE|82810-3^Pregnancy status^LN^^^^2.68^^Pregnancy status||60001007^Not pregnant^SCT|||^^^^^^2.7|||F|||20240826222530+0000|12D4567890^Testing Lab^CLIA||||||||Testing Lab^L^^^^CLIA&2.16.840.1.113883.4.7&ISO^XX^^^12D4567890|123 Beach Way^^Denver^CO^80210^USA|||||QST
+OBX|4|CWE|95418-0^Employed in a healthcare setting^LN^^^^2.69^^Employed in a healthcare setting||Y^Yes^HL70136|||^^^^^^2.7|||F|||20240826222530+0000|12D4567890^Testing Lab^CLIA||||||||Testing Lab^L^^^^CLIA&2.16.840.1.113883.4.7&ISO^XX^^^12D4567890|123 Beach Way^^Denver^CO^80210^USA|||||QST
+OBX|5|CWE|95421-4^Resides in a congregate care setting^LN^^^^2.69^^Resides in a congregate care setting||N^No^HL70136|||^^^^^^2.7|||F|||20240826222530+0000|12D4567890^Testing Lab^CLIA||||||||Testing Lab^L^^^^CLIA&2.16.840.1.113883.4.7&ISO^XX^^^12D4567890|123 Beach Way^^Denver^CO^80210^USA|||||QST
+OBX|6|CWE|76691-5^Gender identity^LN^^^^^^Gender identity||446131000124102^Non-binary gender identity^SCT|||^^^^^^2.7|||F|||20240826222530+0000|12D4567890^Testing Lab^CLIA||||||||Testing Lab^L^^^^CLIA&2.16.840.1.113883.4.7&ISO^XX^^^12D4567890|123 Beach Way^^Denver^CO^80210^USA|||||QST
+SPM|1|ecfbc6c0-0c32-4cf8-adc2-9134281110d8&Testing Lab&12D4567890&CLIA^ecfbc6c0-0c32-4cf8-adc2-9134281110d8&Testing Lab&12D4567890&CLIA||258500001^Nasopharyngeal swab^SCT^^^^2.67^^Nasopharyngeal swab||||87100004^Topography unknown (body structure)^SCT^^^^^^Topography unknown (body structure)|||||||||20240826222530+0000|20240826222530+0000

prime-router/src/testIntegration/resources/datatests/translation-test-config.csv

@@ -69,4 +69,5 @@ FHIR_to_HL7/sample_MA_20240805-0001.fhir,,FHIR_to_HL7/sample_MA_20240805-0001.hl
 FHIR_to_HL7/sample_AR_20240805-0001.fhir,,FHIR_to_HL7/sample_AR_20240805-0001.hl7,classpath:/metadata/hl7_mapping/receivers/STLTs/AR/AR-receiver-transform.yml,HL7,PASS,"","","classpath:/metadata/fhir_transforms/senders/SimpleReport/simple-report-sender-transform.yml","","",""
 FHIR_to_HL7/sample_ME_20240806-0001.fhir,,FHIR_to_HL7/sample_ME_20240806-0001.hl7,classpath:/metadata/hl7_mapping/receivers/STLTs/ME/ME-receiver-transform.yml,HL7,PASS,"","","classpath:/metadata/fhir_transforms/senders/SimpleReport/simple-report-sender-transform.yml","","",""
 FHIR_to_HL7/sample_SR_CSVUPLOADER_20240819-0001.fhir,,FHIR_to_HL7/sample_SR_CSVUPLOADER_20240819-0001.hl7,classpath:/metadata/hl7_mapping/receivers/STLTs/MA/MA-receiver-transform.yml,HL7,PASS,"","","classpath:/metadata/fhir_transforms/senders/SimpleReport/simple-report-sender-transform.yml","","",""
-FHIR_to_HL7/sample_SR_ENTEREDINERROR_20240904-0001.fhir,,FHIR_to_HL7/sample_SR_ENTEREDINERROR_20240904-0001.hl7,classpath:/metadata/hl7_mapping/receivers/STLTs/CA/CA-receiver-transform.yml,HL7,PASS,"","","classpath:/metadata/fhir_transforms/senders/SimpleReport/simple-report-sender-transform.yml","","",""
+FHIR_to_HL7/mars_unwanted_condition_to_notes.fhir,,FHIR_to_HL7/mars_unwanted_condition_to_notes.hl7,classpath:/metadata/hl7_mapping/receivers/STLTs/Test/test-receiver-transform.yml,HL7,PASS,,,classpath:/metadata/fhir_transforms/senders/SimpleReport/simple-report-sender-transform.yml,,,
+FHIR_to_HL7/sample_SR_ENTEREDINERROR_20240904-0001.fhir,,FHIR_to_HL7/sample_SR_ENTEREDINERROR_20240904-0001.hl7,classpath:/metadata/hl7_mapping/receivers/STLTs/CA/CA-receiver-transform.yml,HL7,PASS,"","","classpath:/metadata/fhir_transforms/senders/SimpleReport/simple-report-sender-transform.yml","","",""