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Adding tests for new misc mappings
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@JFisk42
JFisk42 committed Sep 25, 2024
1 parent f78edd3 commit b6c0ea1
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19 changes: 18 additions & 1 deletion ...datatests/mappinginventory/catchall/orcobr/ORCOBRToServiceRequestDiagnosticReportTests.kt
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Expand Up @@ -68,11 +68,17 @@ class ORCOBRToServiceRequestDiagnosticReportTests {
}

@Test
fun `test correctly handles the effective when OBR8 is not populated`() {
fun `test correctly handles the effectiveDateTime when OBR8 is not populated`() {
val testFileName = "catchall/orcobr/orc_obr-to-servicerequest_diagnosticreport-obr8-not-populated"
assert(verifyHL7ToFHIRToHL7Mapping(testFileName).passed)
}

@Test
fun `test correctly handles the effectivePeriod when OBR8 is populated`() {
val testFileName = "catchall/orcobr/orc_obr-to-servicerequest_diagnosticreport-obr8-populated"
assert(verifyHL7ToFHIRToHL7Mapping(testFileName).passed)
}

@Test
fun `test handles mapped HL7 values to OBRExtension from OBR25`() {
val testFileName = "catchall/orcobr/orc_obr-to-servicerequest_diagnosticreport-obr25"
Expand All @@ -90,4 +96,15 @@ class ORCOBRToServiceRequestDiagnosticReportTests {
val testFileName = "catchall/orcobr/orc_obr-to-servicerequest_diagnosticreport-obr25-obrext-not-populated"
assert(verifyHL7ToFHIRToHL7Mapping(testFileName, true, false, true).passed)
}

@Test
fun `test populates OML specific fields for OML messages`() {
val testFileName = "catchall/orcobr/orc_obr-to-servicerequest_diagnosticreport-OML-message"
assert(
verifyHL7ToFHIRToHL7Mapping(
testFileName,
outputSchema = "classpath:/metadata/hl7_mapping/OML_O21/OML_O21-test.yml"
).passed
)
}
}
228 changes: 228 additions & 0 deletions ...pinginventory/catchall/orcobr/orc_obr-to-servicerequest_diagnosticreport-OML-message.fhir
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@@ -0,0 +1,228 @@
{
"resourceType" : "Bundle",
"id" : "1727210895046302000.c01043d3-a2b8-4165-8144-3a89a21e51af",
"meta" : {
"lastUpdated" : "2024-09-24T13:48:15.051-07:00"
},
"identifier" : {
"system" : "https://reportstream.cdc.gov/prime-router",
"value" : "20230816123358"
},
"type" : "message",
"timestamp" : "2023-08-16T10:33:58.000-07:00",
"entry" : [ {
"fullUrl" : "MessageHeader/1727210895080407000.40c797c7-32d1-40c7-bed8-d6b80027825b",
"resource" : {
"resourceType" : "MessageHeader",
"id" : "1727210895080407000.40c797c7-32d1-40c7-bed8-d6b80027825b",
"extension" : [ {
"url" : "https://reportstream.cdc.gov/fhir/StructureDefinition/encoding-characters",
"valueString" : "^~\\&#"
}, {
"url" : "https://reportstream.cdc.gov/fhir/StructureDefinition/msh-message-header",
"extension" : [ {
"url" : "MSH.7",
"valueString" : "20230816123358-0500"
} ]
} ],
"eventCoding" : {
"system" : "http://terminology.hl7.org/CodeSystem/v2-0003",
"code" : "O21",
"display" : "OML^O21^OML_O21"
}
}
}, {
"fullUrl" : "Provenance/1727210895309749000.363e82c1-2a17-4dac-a51a-bcfebaedfbc4",
"resource" : {
"resourceType" : "Provenance",
"id" : "1727210895309749000.363e82c1-2a17-4dac-a51a-bcfebaedfbc4",
"recorded" : "2023-08-16T12:33:58-05:00",
"activity" : {
"coding" : [ {
"display" : "OML^O21^OML_O21"
} ]
}
}
}, {
"fullUrl" : "Provenance/1727210895317838000.2502e208-a7b7-4295-9285-d6b562b5f2cf",
"resource" : {
"resourceType" : "Provenance",
"id" : "1727210895317838000.2502e208-a7b7-4295-9285-d6b562b5f2cf",
"recorded" : "2024-09-24T13:48:15Z",
"policy" : [ "http://hl7.org/fhir/uv/v2mappings/message-oru-r01-to-bundle" ],
"activity" : {
"coding" : [ {
"code" : "v2-FHIR transformation"
} ]
},
"agent" : [ {
"type" : {
"coding" : [ {
"system" : "http://terminology.hl7.org/CodeSystem/provenance-participant-type",
"code" : "assembler"
} ]
},
"who" : {
"reference" : "Organization/1727210895317355000.6a6cbbc8-59f8-4d58-b882-b65c759b13e7"
}
} ]
}
}, {
"fullUrl" : "Organization/1727210895317355000.6a6cbbc8-59f8-4d58-b882-b65c759b13e7",
"resource" : {
"resourceType" : "Organization",
"id" : "1727210895317355000.6a6cbbc8-59f8-4d58-b882-b65c759b13e7",
"identifier" : [ {
"value" : "CDC PRIME - Atlanta"
}, {
"type" : {
"coding" : [ {
"system" : "http://terminology.hl7.org/CodeSystem/v2-0301"
} ]
},
"system" : "urn:ietf:rfc:3986",
"value" : "2.16.840.1.114222.4.1.237821"
} ]
}
}, {
"fullUrl" : "Patient/1727210895326568000.0cebae00-092c-4429-90d1-bbef9f505ed5",
"resource" : {
"resourceType" : "Patient",
"id" : "1727210895326568000.0cebae00-092c-4429-90d1-bbef9f505ed5"
}
}, {
"fullUrl" : "Provenance/1727210895327024000.4fbda015-793f-40cc-a1e9-a1eb6a5daf3f",
"resource" : {
"resourceType" : "Provenance",
"id" : "1727210895327024000.4fbda015-793f-40cc-a1e9-a1eb6a5daf3f",
"target" : [ {
"reference" : "Patient/1727210895326568000.0cebae00-092c-4429-90d1-bbef9f505ed5"
} ],
"recorded" : "2024-09-24T13:48:15Z",
"activity" : {
"coding" : [ {
"system" : "https://terminology.hl7.org/CodeSystem/v3-DataOperation",
"code" : "UPDATE"
} ]
}
}
}, {
"fullUrl" : "Observation/1727210895329920000.4cf57284-e02c-48cd-aab9-1deda683c63e",
"resource" : {
"resourceType" : "Observation",
"id" : "1727210895329920000.4cf57284-e02c-48cd-aab9-1deda683c63e",
"extension" : [ {
"url" : "https://reportstream.cdc.gov/fhir/StructureDefinition/obx-observation",
"extension" : [ {
"url" : "OBX.2",
"valueId" : "CWE"
}, {
"url" : "OBX.11",
"valueString" : "F"
} ]
} ],
"status" : "final",
"subject" : {
"reference" : "Patient/1727210895326568000.0cebae00-092c-4429-90d1-bbef9f505ed5"
},
"valueCodeableConcept" : {
"coding" : [ {
"extension" : [ {
"url" : "https://reportstream.cdc.gov/fhir/StructureDefinition/cwe-coding",
"valueString" : "coding"
} ],
"display" : "Observation Value"
} ]
}
}
}, {
"fullUrl" : "Specimen/1727210895439549000.0c149441-634a-4604-b88f-9ee78d57c4e4",
"resource" : {
"resourceType" : "Specimen",
"id" : "1727210895439549000.0c149441-634a-4604-b88f-9ee78d57c4e4",
"extension" : [ {
"url" : "https://reportstream.cdc.gov/fhir/StructureDefinition/hl7v2Segment",
"valueString" : "OBR"
} ]
}
}, {
"fullUrl" : "Specimen/1727210895441860000.08158d26-3a5e-4015-a193-d6a193dc2567",
"resource" : {
"resourceType" : "Specimen",
"id" : "1727210895441860000.08158d26-3a5e-4015-a193-d6a193dc2567",
"extension" : [ {
"url" : "https://reportstream.cdc.gov/fhir/StructureDefinition/hl7v2Segment",
"valueString" : "SPM"
} ],
"identifier" : [ {
"extension" : [ {
"url" : "https://reportstream.cdc.gov/fhir/StructureDefinition/namespace-id",
"valueString" : "Placer Assigned Identifier"
}, {
"url" : "https://reportstream.cdc.gov/fhir/StructureDefinition/hl7v2Component",
"valueString" : "SPM.2.1"
} ],
"type" : {
"coding" : [ {
"system" : "http://terminology.hl7.org/CodeSystem/v2-0203",
"code" : "PGN"
} ]
}
} ],
"collection" : {
"bodySite" : {
"coding" : [ {
"extension" : [ {
"url" : "https://reportstream.cdc.gov/fhir/StructureDefinition/cwe-coding",
"valueString" : "coding"
} ],
"display" : "Specimen Source Site"
} ]
}
}
}
}, {
"fullUrl" : "ServiceRequest/1727210895444883000.cf6a4628-3c45-49be-b512-2746edc3c508",
"resource" : {
"resourceType" : "ServiceRequest",
"id" : "1727210895444883000.cf6a4628-3c45-49be-b512-2746edc3c508",
"extension" : [ {
"url" : "https://reportstream.cdc.gov/fhir/StructureDefinition/business-event",
"valueCode" : "RE"
}, {
"url" : "https://reportstream.cdc.gov/fhir/StructureDefinition/obr-observation-request",
"extension" : [ {
"url" : "OBR.2",
"valueIdentifier" : {
"value" : "Placer Identifier"
}
} ]
} ],
"identifier" : [ {
"extension" : [ {
"url" : "https://reportstream.cdc.gov/fhir/StructureDefinition/hl7v2Field",
"valueString" : "ORC.2"
} ],
"type" : {
"coding" : [ {
"system" : "http://terminology.hl7.org/CodeSystem/v2-0203",
"code" : "PLAC"
} ]
},
"value" : "ORC Placer Identifier"
} ],
"status" : "unknown",
"subject" : {
"reference" : "Patient/1727210895326568000.0cebae00-092c-4429-90d1-bbef9f505ed5"
},
"supportingInfo" : [ {
"reference" : "Observation/1727210895329920000.4cf57284-e02c-48cd-aab9-1deda683c63e"
} ],
"specimen" : [ {
"reference" : "Specimen/1727210895441860000.08158d26-3a5e-4015-a193-d6a193dc2567"
}, {
"reference" : "Specimen/1727210895439549000.0c149441-634a-4604-b88f-9ee78d57c4e4"
} ]
}
} ]
}
6 changes: 6 additions & 0 deletions ...ppinginventory/catchall/orcobr/orc_obr-to-servicerequest_diagnosticreport-OML-message.hl7
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@@ -0,0 +1,6 @@
MSH|^~\&#|||||20230816123358-0500||OML^O21^OML_O21|20230816123358||2.5.1
PID|1
ORC|RE|ORC Placer Identifier
OBR|1|Placer Identifier
OBX|1|CWE|||^Observation Value||||||F
SPM|1|&Placer Assigned Identifier||||||^Specimen Source Site
15 changes: 12 additions & 3 deletions ...entory/catchall/orcobr/orc_obr-to-servicerequest_diagnosticreport-obr8-not-populated.fhir
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Expand Up @@ -119,7 +119,16 @@
"extension" : [ {
"url" : "https://reportstream.cdc.gov/fhir/StructureDefinition/hl7v2Segment",
"valueString" : "OBR"
} ]
} ],
"collection" : {
"collectedDateTime" : "2021-08-16T12:33:58-05:00",
"_collectedDateTime" : {
"extension" : [ {
"url" : "https://reportstream.cdc.gov/fhir/StructureDefinition/hl7v2-date-time",
"valueString" : "20210816123358-0500"
} ]
}
}
}
}, {
"fullUrl" : "ServiceRequest/1710885177785768000.9ad05561-d558-46bd-afd4-18b1b895213f",
Expand Down Expand Up @@ -150,11 +159,11 @@
"subject" : {
"reference" : "Patient/1710885177487304000.8acbfe50-ad34-4a1a-b0bf-284256794cae"
},
"effectiveDateTime" : "2023-08-16T12:33:58-05:00",
"effectiveDateTime" : "2021-08-16T12:33:58-05:00",
"_effectiveDateTime" : {
"extension" : [ {
"url" : "https://reportstream.cdc.gov/fhir/StructureDefinition/hl7v2-date-time",
"valueString" : "20230816123358-0500"
"valueString" : "20210816123358-0500"
} ]
},
"specimen" : [ {
Expand Down
2 changes: 1 addition & 1 deletion ...ventory/catchall/orcobr/orc_obr-to-servicerequest_diagnosticreport-obr8-not-populated.hl7
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Original file line number Diff line number Diff line change
@@ -1,3 +1,3 @@
MSH|^~\&#|||||20230816123358-0500||ORU^R01^ORU_R01|20230816123358||2.5.1
PID|1
OBR|1||||||20230816123358-0500||||||||||||||||||F
OBR|1||||||20210816123358-0500||||||||||||||||||F
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