Update README.md

herg-real-data/README.md

@@ -22,8 +22,13 @@ Table S3: Run `print-tex-table.py` to generate Table S3.
 ### Extra results mentioned but not shown in the paper
 Results for [fitting the full voltage-clamp model to data](out/herg25oc1-full2vclinleak): Run `fit-full2vclinleak.sh`.
 
-Results for ['Hypothesis 3'](out/herg25oc1-simvclinleak):
-1. Run `fit-simvclinleak.sh` to reproduce 'Hypothesis 3' results.
+Results for 'Hypothesis 3':
+
+All results are cached, so all figures can be re-generated by simply running the figure plots.
+All results for 'Hypothesis 3' can be reproduced by running:
+1. Run `fit-simvclinleak.sh` to reproduce ['Hypothesis 3' results](out/herg25oc1-simvclinleak).
 2. Run `compute-rmsd-hist-fit-simvclinleak.py` to recompute all the [RRMSE values for 'Hypothesis 3'](out/rmsd-hist-herg25oc1-fit-simvclinleak).
-3. Run `plot-rmsd-hist-independent-v-scheme3-v-simlinleak-part1.py` to generate [an equivalent of Figure 7 for 'Hypothesis 3'](figs/rmsd-hist-independent-v-scheme3-v-simlinleak-part1.png).
-4. Run  `plot-param-fit-simvclinleak-artefacts.py` to generate [an equivalent of Figure 8 for 'Hypothesis 3'](figs/herg25oc1-simvclinleak-artefacts.png).
+
+To re-generate figures:
+- [An equivalent of Figure 7 for 'Hypothesis 3'](figs/rmsd-hist-independent-v-scheme3-v-simlinleak-part1.png): Run `plot-rmsd-hist-independent-v-scheme3-v-simlinleak-part1.py`.
+- [An equivalent of Figure 8 for 'Hypothesis 3'](figs/herg25oc1-simvclinleak-artefacts.png): Run  `plot-param-fit-simvclinleak-artefacts.py`.