build

Fixed bug that resulted in an error when there weren't two copies of … #232

	name: build
	on: [push]

	jobs:
	build:
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version: [3.7 ,3.8, 3.9, '3.10', 3.11]
	steps:
	- name: Checkout repository and submodules
	uses: actions/checkout@v1
	with:
	submodules: recursive
	- name: Checkout github repo (+ download lfs dependencies)
	uses: actions/checkout@v2
	with:
	lfs: true
	- name: Checkout LFS objects
	run: git lfs checkout
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v1
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install dependencies
	run: \|
	eval `ssh-agent -s`
	ssh-add - <<< '${{ secrets.syncropatch_export_key }}'
	python -m pip install --upgrade pip
	python -m pip install -e .[test]
	- name: Extract test data
	run: \|
	wget https://cardiac.nottingham.ac.uk/syncropatch_export/test_data.tar.xz -P tests/
	tar xvf tests/test_data.tar.xz -C tests/
	- name: Test with pytest
	run: \|
	python -m pip install -e .
	python -m pytest --cov --cov-config=.coveragerc
	- name: Run export with test data
	timeout-minutes: 15
	run: \|
	sudo apt-get install dvipng texlive-latex-extra texlive-fonts-recommended cm-super -y
	pcpostprocess run_herg_qc tests/test_data/13112023_MW2_FF -w A01 A02 A03
	- uses: codecov/codecov-action@v1
	with:
	token: ${{ secrets.CODECOV_TOKEN }} # not required for public repos
	- name: Lint with flake8
	run: \|
	python -m flake8 pcpostprocess/.py tests/.py pcpostprocess/scripts/*.py
	- name: Import sorting with isort
	run: \|
	python -m isort --verbose --check-only --diff pcpostprocess tests setup.py

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