allow RM2Bed to read and write from pipes#253
Open
ASLeonard wants to merge 1 commit intoDfam-consortium:masterfrom
Open
allow RM2Bed to read and write from pipes#253ASLeonard wants to merge 1 commit intoDfam-consortium:masterfrom
ASLeonard wants to merge 1 commit intoDfam-consortium:masterfrom
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Reading and writing from pipes was handy, and nothing was really preventing that. Some minor modifications to read from stdin rather than a file and changed
output_bedto fix a pandasto_csverror.I've tested this on my own files for piped input/output or files, but there may be unexpected edge cases.