ci_corr3 #11
Workflow file for this run
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| name: HTTomo dev build | |
| on: | |
| push: | |
| branches: | |
| - dev | |
| pull_request: | |
| branches: | |
| - dev | |
| jobs: | |
| install-httomo-dev-test-iris: | |
| runs-on: iris-gpu | |
| container: | |
| image: nvidia/cuda:11.6.2-devel-ubi8 | |
| env: | |
| NVIDIA_VISIBLE_DEVICES: ${{ env.NVIDIA_VISIBLE_DEVICES }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout repository code | |
| uses: actions/checkout@v3 | |
| - name: Create conda environment | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: conda/environment.yml | |
| environment-name: httomo | |
| post-cleanup: 'all' | |
| init-shell: bash | |
| # - name: Install httomo-dev from conda-cloud | |
| # run: | | |
| # micromamba activate httomo | |
| # micromamba install "httomo/label/dev/linux-64::httomo * py310_openmpi_regular*" -c httomo -c conda-forge -c astra-toolbox -c rapidsai -y | |
| # micromamba list | |
| - name: Install httomo-dev | |
| run: | | |
| micromamba activate httomo | |
| pip install .[dev] | |
| micromamba list | |
| - name: Generate yaml templates | |
| run: | | |
| python ./scripts/yaml_templates_generator.py -i ./httomo/methods_database/packages/httomo_modules.yaml -o ./httomo/yaml_templates/httomo | |
| python ./scripts/yaml_templates_generator.py -i ./httomo/methods_database/packages/external/tomopy/tomopy_modules.yaml -o ./httomo/yaml_templates/tomopy | |
| python ./scripts/yaml_unsupported_tomopy_remove.py -t ./httomo/yaml_templates/tomopy -l ./httomo/methods_database/packages/external/tomopy/tomopy.yaml | |
| python ./scripts/yaml_templates_generator.py -i ./httomo/methods_database/packages/external/httomolib/httomolib_modules.yaml -o ./httomo/yaml_templates/httomolib | |
| python ./scripts/yaml_templates_generator.py -i ./httomo/methods_database/packages/external/httomolibgpu/httomolibgpu_modules.yaml -o ./httomo/yaml_templates/httomolibgpu | |
| - name: Run tests | |
| run: | | |
| pytest tests/ | |