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Xref Mapping New pipeline#980

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TamaraNaboulsi wants to merge 12 commits intoEnsembl:mainEnsembl/ensembl-production:mainfrom TamaraNaboulsi:xref/new_pipelineTamaraNaboulsi/ensembl-production:xref/new_pipelineCopy head branch name to clipboard

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Commits on Oct 14, 2024

• New python/nextflow processing xref pipeline

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  57ccb9d

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Commits on Oct 28, 2024

• Parsers: optimizations + unit tests

  

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  9047a9b

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Commits on Nov 8, 2024

• New tests and fixes

  

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Commits on Nov 18, 2024

• Changes/fixes to the download pipeline

  

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  5c5f862

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Commits on Dec 2, 2024

• Download Pipeline fixes

  

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  571d04e

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Commits on Dec 3, 2024

• New xref processing pipleine

  

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Commits on Jan 6, 2025

• Test modifications

  

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• Bug fixes

  

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  d24e06b

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Commits on Jan 13, 2025

• More fixes

  

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• Uniprot & Refseq are always split by species

  

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• Add --config_file parameter to list of params

  

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Commits on Jan 21, 2025

• Minor email notification update + coordinate mapper fix

  

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